View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15826_low_3 (Length: 342)
Name: NF15826_low_3
Description: NF15826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15826_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 33216281 - 33216608
Alignment:
| Q |
1 |
tttgttatatcacttacaatgatatgccattgctatcaatgtttaacagaagacagtgattttttcagtttatatagaaacaaaacaaactgaacgcaaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33216281 |
tttgttataccacttacaatgatatgccattgctatcaatgtttaacagaagacagtgattttttcagtttatatagaaacaaaacaaactgaacacaaa |
33216380 |
T |
|
| Q |
101 |
cctcagacagaaccttctctattcatcaaaacaaaacttcaaacttctttgtttttccactattcaa--nnnnnnnnnnnnnnnnnnnatcattattttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
33216381 |
cctcagacagaaccttctctattcatcaatacaaaacttcaaacttctttgtttttccactattcaactctctctctctctctctctcatcattgttttt |
33216480 |
T |
|
| Q |
199 |
ctttatactaaagttgttttgcaaactgaagttaaagtttccactactacaatggaaagttctgagatattttctcaaagaagtaacaatggcttgaacc |
298 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33216481 |
ctttatactaaagtagttttgcaaactgaagttaaagtttccactactacaatggaaagttctgagatattttctcaaagaagtaacaatggcttgaacc |
33216580 |
T |
|
| Q |
299 |
tcaaggctactgagttaagacttggttt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33216581 |
tcaaggctactgagttaagacttggttt |
33216608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University