View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15826_low_5 (Length: 263)
Name: NF15826_low_5
Description: NF15826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15826_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 7106371 - 7106129
Alignment:
| Q |
18 |
tatatcctaagactgttgaggtagctcgtaaacttctaactgcaaggccttattttctatcattatatccattcatacacactactgaagtgtctttgtt |
117 |
Q |
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| T |
7106371 |
tatatcctaagactgttgaggtagctcgtaaacttctaactgcaaggccttattttctatcattatatccattcatacacaccactgaagtgtctttgtt |
7106272 |
T |
|
| Q |
118 |
aatattagcgattgtgaaccttgcatatatcannnnnnngccattgtttaggatataaaaagcaagttatggtgaccctgtctttgttaatattagtgat |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7106271 |
aatattagcgattgtgaaccttgcatatatcatttttttgccattgtttaggatataaaaagtaagttatggtgaccctgtctttgttaatattagtgat |
7106172 |
T |
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| Q |
218 |
gcttgcatgtatcattttatttctcctttgttcttctctctcg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7106171 |
gcttgcatgtatcattttatttctcctttgttcttctttctcg |
7106129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 15809755 - 15809876
Alignment:
| Q |
18 |
tatatcctaagactgttgaggtagctcgtaaacttctaactgcaaggccttattttctatcattatatccattcatacacactactgaagtgtctttgtt |
117 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
15809755 |
tatatcctaagaccgttgaggtagctcataaacttctaactgcaaggccttattttctatcattatatccattcatacacaccactgaagtgcctttgtt |
15809854 |
T |
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| Q |
118 |
aatattagcgattgtgaacctt |
139 |
Q |
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| T |
15809855 |
aatattagcgattgtgaacctt |
15809876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 9759049 - 9758818
Alignment:
| Q |
18 |
tatatcctaagactgttgaggtagctcgtaaacttctaactgcaaggccttattttctatcattatatccattcatacacactactgaagtgtctttgtt |
117 |
Q |
| |
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|||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
9759049 |
tatatcctaagactcttgaggtagctcataaactcttaactgcaaggccttattttctatcattatatccattcatacacatgactacagtgtctttgtt |
9758950 |
T |
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| Q |
118 |
aatattagcgattgtgaaccttgcatatatcannnnnnngccattgtttaggatataaaaagcaagttatggtgaccctgtctttgttaatattagtgat |
217 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
9758949 |
aatattagcgattgtgaaagttgcatatatcatttttttgccattgtttaagatataaaaagtaagttatggtgaccatgtctttgttaatattagtgat |
9758850 |
T |
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| Q |
218 |
gcttgcatgtatcattttatttctcctttgtt |
249 |
Q |
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||||| |||||||||||| |||||| |||||| |
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| T |
9758849 |
gcttgtatgtatcattttctttctcttttgtt |
9758818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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