View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15827_high_3 (Length: 357)
Name: NF15827_high_3
Description: NF15827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15827_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 340
Target Start/End: Original strand, 11822300 - 11822638
Alignment:
| Q |
2 |
caatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaa |
101 |
Q |
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| T |
11822300 |
caatttcctcttacgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaa |
11822399 |
T |
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| Q |
102 |
agatgtcgagttttataataaggtgacaataacatctttatcaagtagtttttattaaaatttaattactcaacctctaactttaaagtattcttttgca |
201 |
Q |
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| T |
11822400 |
agatgttgagttttataataaggtgacaataacatctttataaagtagtttttattaaaatttaatttcttaacctctaactttaaagtattcttttgca |
11822499 |
T |
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| Q |
202 |
aacaacacccggtttgagtgcatatgcggataatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggttcctgaggac |
301 |
Q |
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| T |
11822500 |
gacaacacccggtttgagtgcatacgcggataatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggttcctgaggac |
11822599 |
T |
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| Q |
302 |
caacgctccaagacacccattagacttggggtaagtttt |
340 |
Q |
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| T |
11822600 |
cagcgctccaagacacccgttagacttggggtaagtttt |
11822638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 132 - 340
Target Start/End: Original strand, 32922203 - 32922411
Alignment:
| Q |
132 |
aacatctttatcaagtagtttttattaaaatttaattactcaacctctaactttaaagtattcttttgcaaacaacacccggtttgagtgcatatgcgga |
231 |
Q |
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| T |
32922203 |
aacatttttataaagtagtttttattagaatttaatttctcaacttctaactttaaagtattcttttatagacaacgcccggtttgagtgcatacgcgga |
32922302 |
T |
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| Q |
232 |
taatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggttcctgaggaccaacgctccaagacacccattagacttggg |
331 |
Q |
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| T |
32922303 |
taatccagaagaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtagttcctgaggatcagcgctccaagacacccattagacttggg |
32922402 |
T |
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| Q |
332 |
gtaagtttt |
340 |
Q |
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|||| |||| |
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| T |
32922403 |
gtaaatttt |
32922411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 32921779 - 32921918
Alignment:
| Q |
1 |
ccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32921779 |
ccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggta |
32921878 |
T |
|
| Q |
101 |
aagatgtcgagttttataataaggtgacaataacatcttt |
140 |
Q |
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| T |
32921879 |
aagatgttgagttttataataaggtgacaataacatcttt |
32921918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 32910391 - 32910525
Alignment:
| Q |
2 |
caatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaa |
101 |
Q |
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| T |
32910391 |
caatttcctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttaccattttgatcagaacttagatcttcttcatattggcaa |
32910490 |
T |
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| Q |
102 |
agatgtcgagttttataataaggtgacaataacat |
136 |
Q |
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| T |
32910491 |
agatgttgagttttttaataaggtgacaataacat |
32910525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 32940485 - 32940594
Alignment:
| Q |
16 |
gctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgtcgagtttt |
115 |
Q |
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||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||| |||||||||| |||| || ||||| ||||||| |
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| T |
32940485 |
gctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtttt |
32940584 |
T |
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| Q |
116 |
ataataaggt |
125 |
Q |
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|||||||||| |
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| T |
32940585 |
ataataaggt |
32940594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 32940766 - 32940859
Alignment:
| Q |
203 |
acaacacccggtttgagtgcatatgcggataatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggttcctg |
296 |
Q |
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| T |
32940766 |
acaacacccggtttgagtgcatacgcagataatccaaaggaagcagcagagtctctgattccacttttagagcaagcagaaagagtggttcctg |
32940859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 32932464 - 32932552
Alignment:
| Q |
212 |
ggtttgagtgcatatgcggataatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggttcctgagga |
300 |
Q |
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| T |
32932464 |
ggtttgagtgcatatgcggataatcctgaacaagcagcaaaatctctccttccacttttggaggaagcagaagatgtgattcctgagga |
32932552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 32910775 - 32910861
Alignment:
| Q |
205 |
aacacccggtttgagtgcatatgcggataatccagaacaagctgcaaaatctttgattccacttttagagcaagcagaaagtgtggt |
291 |
Q |
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| T |
32910775 |
aacacctggtttgagttcatatgcaaatgatccggaacaagctgcaaaatctttgattccacttctacaacaagcagaaaatgtggt |
32910861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 32932266 - 32932333
Alignment:
| Q |
25 |
tttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttca |
92 |
Q |
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| T |
32932266 |
tttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttca |
32932333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 32897449 - 32897545
Alignment:
| Q |
9 |
ctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagat |
105 |
Q |
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| T |
32897449 |
ctcttatgctgttatttttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagat |
32897545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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