View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15827_high_4 (Length: 355)
Name: NF15827_high_4
Description: NF15827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15827_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 29412990 - 29412670
Alignment:
| Q |
17 |
agatgaaggggacaagtcttctcgcggtaatgactgggaggttgtatctctcacagcatcaacttatgcagctgctcctggtccacgtgaagttgaattg |
116 |
Q |
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| T |
29412990 |
agatgaaggggaaaagtcttctcgcagtaatgactgggaggttgtatctctcacagcatcaacttatgcagctgctcctggtccacgtgaagttgagttg |
29412891 |
T |
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| Q |
117 |
aaggatgatgacaaggaagatgcatacgcaataaatgaagctgagacatcgaacactttgttcatgtctggtcacttcgcctttccaccaagtaagcatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412890 |
aaggatgatgacaaggaagatgcatacgcaataaatgaagctgagacatcgaacgctttgttcatgtctggtcacttcgcctttccaccaagtaagcatg |
29412791 |
T |
|
| Q |
217 |
aaaacttgccattggaaatggactatagtgagattcagaatgaatccggagacaaaggtgttgcctttgaagagacttatgaagaagcagccaagcctag |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29412790 |
aaaacttgccattggaaaaggactatagtgagattcagaatgaatccggagacaaaggtgttgcctttgaagagacttatgaagaagcatccaagcctag |
29412691 |
T |
|
| Q |
317 |
tggaaaggatgaagaaaactt |
337 |
Q |
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||||||||||||||||||||| |
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| T |
29412690 |
tggaaaggatgaagaaaactt |
29412670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 10161191 - 10161509
Alignment:
| Q |
19 |
atgaaggggacaagtcttctcgcggtaatgactgggaggttgtatctctcacagcatcaacttatgcagctgctcctggtccacgtgaagttgaattgaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
10161191 |
atgaaggggacaagtcttctcgcggtaatgactgggaggttgtatctctcacaacatcaacttatgcagctactcctggtccacgtgaagttgagttgaa |
10161290 |
T |
|
| Q |
119 |
ggatgatgacaaggaagatgcatacgcaataaatgaagctgagacatcgaacactttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161291 |
ggatgatgacaaggaagatgcatacgcaataaatgaagctgagacatcgaacgctttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaa |
10161390 |
T |
|
| Q |
219 |
aacttgccattggaaatggactatagtgagattcagaatgaatccggagacaaaggtgttgcctttgaagagacttatgaagaagcagccaagcctagtg |
318 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161391 |
aacttgccattggaaacagactatagtgagattcataatgaatccggagacaaaggtgttgcctttgaagagacttatgaagaagcagccaagcctagtg |
10161490 |
T |
|
| Q |
319 |
gaaaggatgaagaaaactt |
337 |
Q |
| |
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||||||||||||||||||| |
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| T |
10161491 |
gaaaggatgaagaaaactt |
10161509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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