View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15827_low_10 (Length: 222)

Name: NF15827_low_10
Description: NF15827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15827_low_10
NF15827_low_10
[»] chr7 (5 HSPs)
chr7 (18-222)||(32921714-32921918)
chr7 (48-218)||(32910355-32910525)
chr7 (22-207)||(32940412-32940594)
chr7 (14-174)||(32932176-32932333)
chr7 (91-187)||(32897449-32897545)
[»] chr4 (1 HSPs)
chr4 (18-222)||(11822234-11822438)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 32921714 - 32921918
Alignment:
Q  18 cttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32921714 cttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctgg 32921813  T
Q  118 tagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgtcgagttttataataaggtgacaataaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32921814 tagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgttgagttttataataaggtgacaataaca 32921913  T
Q  218 tcttt 222  Q
    |||||    
T  32921914 tcttt 32921918  T

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Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 32910355 - 32910525
Alignment:
Q  48 tactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttacca 147  Q
    |||||||||| || |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||    
T  32910355 tactcactaatcgaaagattttccaaaaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttacca 32910454  T
Q  148 ttttgatcaaaacttaaatcttcttcatgttggtaaagatgtcgagttttataataaggtgacaataacat 218  Q
    ||||||||| |||||| ||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||    
T  32910455 ttttgatcagaacttagatcttcttcatattggcaaagatgttgagttttttaataaggtgacaataacat 32910525  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 32940412 - 32940594
Alignment:
Q  22 ctcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagc 121  Q
    ||||||||||||||||||||| |||   ||||| || ||||| || || |||||||||||| |  |  |||| || ||||| || |||||||||||||||    
T  32940412 ctcccaatatcttggaaacaatata---ctcaccaatcgtaaaatatttccaaaacaagaaactctaacctcgtacgctgtcgtctttgatgctggtagc 32940508  T
Q  122 actggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgtcgagttttataataaggt 207  Q
    || || |||||||| ||||| |||||||||||||| |||||| ||||||||||  |||| || ||||| |||||||||||||||||    
T  32940509 accggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagttttataataaggt 32940594  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 32932176 - 32932333
Alignment:
Q  14 atcacttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatg 113  Q
    ||||||| |||||||||| | ||||||||| ||   |||||||| || |||||||||| |||||||||| |  |  | ||||| |||||  | |||||||    
T  32932176 atcacttcctcccaatatttaggaaacaaccta---ctcactaatcgaaagattttccaaaaacaagaaaccttaacatcttacgctgtcatatttgatg 32932272  T
Q  114 ctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttca 174  Q
    ||||||||||||| |  ||||||||||||||||||||||| || |||||| ||||||||||    
T  32932273 ctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttca 32932333  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 32897449 - 32897545
Alignment:
Q  91 ctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagat 187  Q
    ||||||||||||| | ||||||||||||||| |||| |||||||| |||||||  ||||||||||| || ||| ||||| ||||  |||| ||||||    
T  32897449 ctcttatgctgttatttttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagat 32897545  T

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Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 11822234 - 11822438
Alignment:
Q  18 cttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctgg 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  11822234 cttactcccaaaatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaagaaacaatttcctcttacgctgttgtgtttgatgctgg 11822333  T
Q  118 tagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgtcgagttttataataaggtgacaataaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11822334 tagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgttgagttttataataaggtgacaataaca 11822433  T
Q  218 tcttt 222  Q
    |||||    
T  11822434 tcttt 11822438  T

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