View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15827_low_11 (Length: 221)
Name: NF15827_low_11
Description: NF15827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15827_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 5326582 - 5326774
Alignment:
| Q |
14 |
tgaggaggaaatacaattacttttttgagaccattgagaaaattaattagagttaactaaaattcctaattaccgtaaaattaagtatttgtgtttacaa |
113 |
Q |
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| T |
5326582 |
tgagaaggaaatacaattacttttctgagaccattgagaaaattaattagagttaactaaaattcctaattaccgtaaaattaagtatttgtgtttacaa |
5326681 |
T |
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| Q |
114 |
agttaactaaaattcttaattactgtaaaattaagtattttggtttataatagag--tagagagagtaatttacaattggtagtttaaaaaatc |
205 |
Q |
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| T |
5326682 |
agttaactaaaattcttaatta-tgtaaaattaagtatttttgtttataatagagattagagagagtaatttacaattggtagtttaaaaaatc |
5326774 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 15015179 - 15015219
Alignment:
| Q |
128 |
cttaattactgtaaaattaagtattttggtttataatagag |
168 |
Q |
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| T |
15015179 |
cttaattactgtataattaggtattttgatttataatagag |
15015219 |
T |
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