View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15827_low_9 (Length: 237)

Name: NF15827_low_9
Description: NF15827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15827_low_9
NF15827_low_9
[»] chr3 (11 HSPs)
chr3 (11-226)||(2791182-2791397)
chr3 (12-224)||(2769933-2770145)
chr3 (18-226)||(2798223-2798437)
chr3 (11-225)||(2760077-2760297)
chr3 (16-226)||(2749857-2750073)
chr3 (16-224)||(2837660-2837874)
chr3 (19-226)||(5413748-5413961)
chr3 (20-226)||(2808129-2808341)
chr3 (16-224)||(2854870-2855084)
chr3 (11-226)||(2819419-2819643)
chr3 (17-112)||(3356427-3356522)
[»] scaffold0691 (1 HSPs)
scaffold0691 (16-224)||(5212-5426)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 2791397 - 2791182
Alignment:
Q  11 catcatcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttcccttc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  2791397 catcatcatgcacacaatgacagaaacttaagtccttcatttttctgatgagaacttcccagaataaatcatggacttgacatgtttgaactttcccttc 2791298  T
Q  111 aacaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccct 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2791297 aacaattgagacttgaactaaacttctatgaatcaattcagacaagtactcctctgcaacttcctctggagttcgtctctcataacatttaataaaccct 2791198  T
Q  211 tcggctatccattgtc 226  Q
    ||||||||||||||||    
T  2791197 tcggctatccattgtc 2791182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 2770145 - 2769933
Alignment:
Q  12 atcatcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttcccttca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  2770145 atcatcatgcacacaatgacagaaacttaagtccttcatttttttaatgaaaacttcctggaataaatcatggacttgacatgtttgaattttcccttca 2770046  T
Q  112 acaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccctt 211  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||    
T  2770045 acaattgagacttgaactaaacttctatgaatcaattcagacaagtactcctctgcaacttcttctggggttcgtctctcatcagatttaataaaccctt 2769946  T
Q  212 cggctatccattg 224  Q
    | |||||||||||    
T  2769945 cagctatccattg 2769933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 2798437 - 2798223
Alignment:
Q  18 atgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccctt------ca 111  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||||||      ||    
T  2798437 atgcacacaatgacagaatcttaaatccttcatttttctaatgagcacttcccggaataaatcatggactcggcatgtttgaactttcccttcaaatcca 2798338  T
Q  112 acaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccctt 211  Q
    ||| |||| || ||||| | |||||| ||||| | ||||||||| ||||| ||||| |||  |||| ||||||||||||||| | |||||| ||||||||    
T  2798337 acatttgagacctgaaccatacttctgtgaattagttcagacaaatactcttctgcaactatctcttgagttcgtctctcatcagatttaacaaaccctt 2798238  T
Q  212 cggctatccattgtc 226  Q
    | |||||||||||||    
T  2798237 cagctatccattgtc 2798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 2760297 - 2760077
Alignment:
Q  11 catcatcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttcccttc 110  Q
    |||||||||||| |||||| |||||||| || |||||||||||||||||||   ||||||| ||||||||||||||||||||||| || |||||||||||    
T  2760297 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 2760198  T
Q  111 ------aacaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaata 204  Q
          ||||   || ||||| |||| |||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||| ||| | |||||| |    
T  2760197 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctcccatcagatttaaca 2760098  T
Q  205 aacccttcggctatccattgt 225  Q
    |||||||| |||  |||||||    
T  2760097 aacccttcagctgcccattgt 2760077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 2750073 - 2749857
Alignment:
Q  16 tcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttcccttcaa--- 112  Q
    |||||||  ||||||| |||| |||| |||||||||||||||||||    |||||| | |||||||||||||||||||||||||||||| |||||||       
T  2750073 tcatgcatgcaatgaccgaaatttaaatccttcatttttctaatgatcaattcccgcattaaatcatggacttgacatgtttgaacttttccttcaaagc 2749974  T
Q  113 ---caattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccc 209  Q
       || |||| || ||||| |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||| |||||| |   |||| | ||||||    
T  2749973 caacatttgagacctgaaccaaacttctctgaatcaattcagacaagtactcttctgcaacttgctctggagttcttctctcttccaattttacaaaccc 2749874  T
Q  210 ttcggctatccattgtc 226  Q
    ||| |||||||||||||    
T  2749873 ttcagctatccattgtc 2749857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 2837660 - 2837874
Alignment:
Q  16 tcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccctt------ 109  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||          
T  2837660 tcatgcacaaaatgacagaaacttaaattcttcatttttctaatgataacttcccgcaataaatcatggacttgacatgttttaactttcccttcaaagc 2837759  T
Q  110 caacaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccc 209  Q
    ||||| |||| || ||||  | |||||| ||||||||||| |||||||| ||||| ||||||| |||   ||||| |||||||| | |||| | ||||||    
T  2837760 caacatttgagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctctcatcagatttgacaaaccc 2837859  T
Q  210 ttcggctatccattg 224  Q
     || |||||||||||    
T  2837860 ctcagctatccattg 2837874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 5413961 - 5413748
Alignment:
Q  19 tgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccctt------caa 112  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||   ||||||| | ||||||||| |||||||||||||||||||| ||||      |||    
T  5413961 tgcacactatgaccgaaacttaaatccttcatttttctaatgatcacttcccgcagtaaatcatgtacttgacatgtttgaacttttccttcaaagccaa 5413862  T
Q  113 caattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaacccttc 212  Q
    || |||| || ||||| | |||||| |||||||||||||||||||| |||||||| |||| ||| ||||||| |||||| |   ||| || |||||||||    
T  5413861 catttgagacctgaaccagacttctttgaatcaattcagacaagtattcctctgcaacttgctccggagttcttctctcttgcaattgaacaaacccttc 5413762  T
Q  213 ggctatccattgtc 226  Q
     |||||||||||||    
T  5413761 agctatccattgtc 5413748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 2808341 - 2808129
Alignment:
Q  20 gcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccctt------caac 113  Q
    ||||| ||||||| |||||||| ||||||||||| |||||||   ||| ||| ||||||||||||||||||||| |||||||||| ||||      ||||    
T  2808341 gcacagaatgacaaaaacttaaatccttcattttcctaatgatcacttgccgcaataaatcatggacttgacatatttgaacttttccttcaaagccaac 2808242  T
Q  114 aattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaacccttcg 213  Q
    | |||| || ||||| | |||||| |||||||||||| ||||||| |||||||| |  | ||||||||||| ||||||||   |||||| |||||||||     
T  2808241 atttgagacctgaaccagacttctgtgaatcaattcatacaagtattcctctgctatatgctctggagttcttctctcatctgatttaacaaacccttca 2808142  T
Q  214 gctatccattgtc 226  Q
    |||||||||||||    
T  2808141 gctatccattgtc 2808129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 2854870 - 2855084
Alignment:
Q  16 tcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccctt------ 109  Q
    ||||||||  |||||||||||||||| | |||||||||||||||||   ||||||| ||||||||||||||||||||||||| |||||||||||          
T  2854870 tcatgcacgaaatgacagaaacttaaattcttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgttttaactttcccttcaaagc 2854969  T
Q  110 caacaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccc 209  Q
    ||||| |||| || ||||  | |||||| ||||||||||| |||||||| ||||| ||||||| |||   ||||| |||||||| | |||| | ||||||    
T  2854970 caacatttgagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctctcatcagatttgacaaaccc 2855069  T
Q  210 ttcggctatccattg 224  Q
     || |||||||||||    
T  2855070 ctcagctatccattg 2855084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 2819643 - 2819419
Alignment:
Q  11 catcatcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccct-- 108  Q
    |||||||||||||||||||||| || ||||| ||||| |||||| ||||||   ||||||| ||||||||||||||||||||| | | |||||| |||      
T  2819643 catcatcatgcacacaatgacaaaatcttaaatcctttatttttgtaatgatcacttcccgcaataaatcatggacttgacatttatcaactttaccttc 2819544  T
Q  109 ----tcaacaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctca--taacattt-a 201  Q
        ||||||   || |||||||| | |||||| ||||||| ||||||||||||||||||||| |||| ||||||||||| |||| ||  | | |||| |    
T  2819543 aaagtcaacatccgagacttgaaccagacttctctgaatcagttcagacaagtactcctctgcaacttgctctggagttcttctcccaactgatatttga 2819444  T
Q  202 ataaacccttcggctatccattgtc 226  Q
    | ||||||||| |||||||||||||    
T  2819443 acaaacccttcagctatccattgtc 2819419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 3356427 - 3356522
Alignment:
Q  17 catgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttcccttcaa 112  Q
    |||||||  ||||||| |||||||| || ||||||||| ||||||   |||| || || |||||||||||||||||| ||| ||||||||| ||||    
T  3356427 catgcactgaatgacaaaaacttaaatctttcatttttttaatgaccacttcacgcaacaaatcatggacttgacatcttttaactttcccatcaa 3356522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 5212 - 5426
Alignment:
Q  16 tcatgcacacaatgacagaaacttaagtccttcatttttctaatgagagcttcccggaataaatcatggacttgacatgtttgaactttccctt------ 109  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||   |||| || ||||||||||||||||||||||||||||||||||| |          
T  5212 tcatgcacacaatgacaaaaagttaaatccttcatttttctaatgatcacttcacgcaataaatcatggacttgacatgtttgaactttcccctcaaagc 5311  T
Q  110 caacaattgacacttgaactaaacttctatgaatcaattcagacaagtactcctctgccacttcctctggagttcgtctctcataacatttaataaaccc 209  Q
    ||||| |||| || ||||| | |||||| ||||||||||||||||||||||| ||||| |||| ||| |||||| ||||||||| | | |||| ||||||    
T  5312 caacatttgagacctgaaccagacttctgtgaatcaattcagacaagtactcatctgcaacttgctcgggagtttgtctctcatcatacttaacaaaccc 5411  T
Q  210 ttcggctatccattg 224  Q
    ||| |||||||||||    
T  5412 ttcagctatccattg 5426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University