View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15828_high_13 (Length: 270)

Name: NF15828_high_13
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15828_high_13
NF15828_high_13
[»] chr2 (9 HSPs)
chr2 (1-259)||(41022436-41022694)
chr2 (127-208)||(45077840-45077915)
chr2 (127-169)||(38435037-38435079)
chr2 (127-167)||(42149803-42149843)
chr2 (127-162)||(18958996-18959031)
chr2 (131-169)||(33504312-33504350)
chr2 (128-160)||(3481227-3481259)
chr2 (127-167)||(32365071-32365111)
chr2 (127-167)||(43260489-43260529)
[»] chr3 (5 HSPs)
chr3 (127-174)||(42510166-42510213)
chr3 (128-208)||(49921017-49921095)
chr3 (127-169)||(23534725-23534767)
chr3 (129-169)||(33755497-33755537)
chr3 (125-169)||(44395508-44395552)
[»] chr5 (7 HSPs)
chr5 (127-173)||(43475325-43475371)
chr5 (127-169)||(7359415-7359457)
chr5 (131-169)||(21093841-21093879)
chr5 (129-169)||(1525731-1525771)
chr5 (172-209)||(28186868-28186905)
chr5 (128-168)||(2713030-2713070)
chr5 (172-220)||(37918184-37918232)
[»] chr7 (13 HSPs)
chr7 (125-169)||(47848757-47848801)
chr7 (127-169)||(6420645-6420687)
chr7 (172-261)||(38135254-38135343)
chr7 (127-174)||(5418165-5418212)
chr7 (129-168)||(27893707-27893746)
chr7 (127-169)||(26742051-26742093)
chr7 (128-169)||(1569102-1569143)
chr7 (127-168)||(1740886-1740927)
chr7 (127-168)||(23720926-23720967)
chr7 (129-166)||(47796310-47796347)
chr7 (172-220)||(24549770-24549818)
chr7 (172-220)||(29653628-29653676)
chr7 (127-171)||(39812042-39812086)
[»] chr1 (7 HSPs)
chr1 (127-163)||(40416456-40416492)
chr1 (127-169)||(5338809-5338851)
chr1 (127-169)||(6025690-6025732)
chr1 (127-169)||(8796294-8796336)
chr1 (172-209)||(3818949-3818986)
chr1 (128-169)||(27704094-27704135)
chr1 (129-169)||(50846652-50846692)
[»] chr6 (5 HSPs)
chr6 (129-171)||(8364643-8364685)
chr6 (127-168)||(14389324-14389365)
chr6 (127-171)||(6293539-6293583)
chr6 (127-169)||(579503-579545)
chr6 (127-169)||(6906982-6907024)
[»] chr4 (6 HSPs)
chr4 (127-169)||(21945793-21945835)
chr4 (127-169)||(56439744-56439786)
chr4 (127-169)||(28351644-28351686)
chr4 (127-169)||(34233179-34233221)
chr4 (127-168)||(15662014-15662055)
chr4 (127-168)||(25967417-25967458)
[»] scaffold0018 (1 HSPs)
scaffold0018 (127-169)||(44023-44065)
[»] chr8 (10 HSPs)
chr8 (127-169)||(7531799-7531841)
chr8 (127-169)||(29520735-29520777)
chr8 (127-169)||(29700361-29700403)
chr8 (127-169)||(32931046-32931088)
chr8 (127-169)||(38178415-38178457)
chr8 (127-168)||(5908731-5908772)
chr8 (127-168)||(11733832-11733873)
chr8 (172-241)||(24399850-24399919)
chr8 (172-209)||(29520801-29520838)
chr8 (128-168)||(35914757-35914797)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 41022694 - 41022436
Alignment:
Q  1 ttgtagttttgttaagattattttgatggacatttatattttcgagaactatattggtgctaaagaccaatttgaattcatttatttgcacttatcgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41022694 ttgtagttttgttaagattattttgatggacatttatattttcgagaactatattggtgctaaagaccaatttgaattcatttatttgcacttatcgaga 41022595  T
Q  101 gagaagacctgctgtagtagtaagactaaggagagtagatcagatgcaggatagtcagatcactagaggaaaagagaaactgttaagaatgatttagaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41022594 gagaagacctgctgtagtagtaagactaaggagagtagatcagatgcaggatagtcagatcactagaggaaaagagaaactgttaagaatgatctagaga 41022495  T
Q  201 ttaatgagtcagattgaaatgtgggttacgatagagtattacgacgtgatttgattcat 259  Q
    ||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||    
T  41022494 ttaatgagtcagattgagatgtggtttactatagagtattatgacgtgatttgattcat 41022436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 45077840 - 45077915
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagaggaaaagagaaactgttaagaatgatttagagattaatgag 208  Q
    |||||||||||||||||||| ||||||||||||||||| |      ||| ||||| ||||||| ||||||||||||||||||    
T  45077840 taaggagagtagatcagatggaggatagtcagatcacttg------agaaaaactattaagaaagatttagagattaatgag 45077915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 38435037 - 38435079
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  38435037 taaggagagtagatcatatggaggatagtcagatcactagagg 38435079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 42149843 - 42149803
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactaga 167  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  42149843 taaggagagtagatcagatgcaggatagccaaatcactaga 42149803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 18958996 - 18959031
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatca 162  Q
    |||||||||||||||||||| |||||||||||||||    
T  18958996 taaggagagtagatcagatggaggatagtcagatca 18959031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 33504312 - 33504350
Alignment:
Q  131 gagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  33504312 gagagtagatcagatggagggtagtcagatcactagagg 33504350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 3481227 - 3481259
Alignment:
Q  128 aaggagagtagatcagatgcaggatagtcagat 160  Q
    ||||||||||||||||||| |||||||||||||    
T  3481227 aaggagagtagatcagatggaggatagtcagat 3481259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 32365111 - 32365071
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactaga 167  Q
    |||| ||||||||||| ||| ||||||||||||||||||||    
T  32365111 taagaagagtagatcaaatggaggatagtcagatcactaga 32365071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 43260489 - 43260529
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactaga 167  Q
    |||||||||||||||||||| ||| |||||| |||||||||    
T  43260489 taaggagagtagatcagatggagggtagtcaaatcactaga 43260529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 42510213 - 42510166
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagaggaaaag 174  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  42510213 taaggagagtagatcagatggaggatagtcagatcactagaggcaaag 42510166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 49921017 - 49921095
Alignment:
Q  128 aaggagagtagatcagatgcaggatagtcagatcactagaggaaaagagaaactgttaagaatgatttagagattaatgag 208  Q
    ||||| ||||||| ||||| |||||| ||||||||||||||  ||| ||||||| ||||||| |||||| |||||||||||    
T  49921017 aaggacagtagattagatggaggatattcagatcactagag--aaaaagaaactcttaagaaagatttaaagattaatgag 49921095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 23534767 - 23534725
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| | |||||| |||||||||||||    
T  23534767 taaggagagtagatcagatggatgatagttagatcactagagg 23534725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 33755537 - 33755497
Alignment:
Q  129 aggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||| ||||| ||| ||||||||||||    
T  33755537 aggagagtagatcagatggaggatggtcggatcactagagg 33755497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 44395508 - 44395552
Alignment:
Q  125 actaaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||| ||| ||| |||||| |||||||||||    
T  44395508 actaaggagagtagatcaaatggagggtagtcaaatcactagagg 44395552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 43475325 - 43475371
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagaggaaaa 173  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  43475325 taaggagagtagatcagatggaggatagtcagatcactataggaaaa 43475371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 7359457 - 7359415
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  7359457 taaggagagtagatcagatggaggatagtcatatcactagagg 7359415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 21093841 - 21093879
Alignment:
Q  131 gagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21093841 gagagtagatcagatggaggatagtcagatcactagagg 21093879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 1525731 - 1525771
Alignment:
Q  129 aggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  1525731 aggagagtagatcagatggaggagagtcagatcactagagg 1525771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 28186905 - 28186868
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagt 209  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  28186905 aagagaaactattaagaaagatttagagattaatgagt 28186868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 2713030 - 2713070
Alignment:
Q  128 aaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    ||||||||||||||||||| |||| ||||| ||||||||||    
T  2713030 aaggagagtagatcagatggaggagagtcaaatcactagag 2713070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 37918184 - 37918232
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagtcagattgaaat 220  Q
    ||||||||||||| |||| ||| |||||||||||||||  |||||||||    
T  37918184 aagagaaactgtttagaaagatatagagattaatgagttggattgaaat 37918232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 47848757 - 47848801
Alignment:
Q  125 actaaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  47848757 actaaggagagtagatcagatggaggatagtctgatcactagagg 47848801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 6420687 - 6420645
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  6420687 taaggagagtagatcagatgaatgatagtcagatcactagagg 6420645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 38135343 - 38135254
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagtcagattgaaatgtgggttacgatagagtattacgacgtgatttgattcatct 261  Q
    |||||||||| |||| || |||||||||||||||||||  ||  ||||| ||||||| |||||| ||||| | ||| ||||||| |||||    
T  38135343 aagagaaactattaaaaaagatttagagattaatgagttggaccgaaatatgggttatgatagaatattatggcgtaatttgatccatct 38135254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 5418165 - 5418212
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagaggaaaag 174  Q
    |||| |||||||||||| || |||||||||||||||||||||| ||||    
T  5418165 taagtagagtagatcaggtggaggatagtcagatcactagaggcaaag 5418212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 27893746 - 27893707
Alignment:
Q  129 aggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  27893746 aggagagtagatcagatggaggatattcagatcactagag 27893707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 26742093 - 26742051
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  26742093 taaggagagtagatcagatagagaatagtcagatcactagagg 26742051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 1569102 - 1569143
Alignment:
Q  128 aaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    ||||||||||||||||||| |||||||||||||  |||||||    
T  1569102 aaggagagtagatcagatggaggatagtcagattgctagagg 1569143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 1740886 - 1740927
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  1740886 taaggagagtagatcagatggagggtagtcaaatcactagag 1740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 23720926 - 23720967
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  23720926 taaggagagtagatcagatgtagggtagtcaaatcactagag 23720967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 47796347 - 47796310
Alignment:
Q  129 aggagagtagatcagatgcaggatagtcagatcactag 166  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  47796347 aggagagtagatcagatggaggattgtcagatcactag 47796310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 24549818 - 24549770
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagtcagattgaaat 220  Q
    |||||||||| ||||||| ||| |||||||||||||||  |||||||||    
T  24549818 aagagaaactattaagaaagatctagagattaatgagttggattgaaat 24549770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 29653676 - 29653628
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagtcagattgaaat 220  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||| |||||    
T  29653676 aagagaaactattaagaaagatctagagattaatgagttagatagaaat 29653628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 39812042 - 39812086
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagaggaa 171  Q
    |||||||||||||||||||| |||| || || |||||||||||||    
T  39812042 taaggagagtagatcagatggaggaaagccaaatcactagaggaa 39812086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 40416456 - 40416492
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcac 163  Q
    |||||||||||||||||||||||||||||||||||||    
T  40416456 taaggagagtagatcagatgcaggatagtcagatcac 40416492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 5338809 - 5338851
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||||| |||||||||||||||    
T  5338809 taaggagagtagatcagatggaggatattcagatcactagagg 5338851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 6025690 - 6025732
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| ||| |||||| |||||||||||    
T  6025690 taaggagagtagatcagatgtagggtagtcaaatcactagagg 6025732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 8796294 - 8796336
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||    
T  8796294 taaggagagtaaatcggatggaggatagtcagatcactagagg 8796336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 3818986 - 3818949
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagt 209  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  3818986 aagagaaactattaagaaagatttagagattaatgagt 3818949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 27704094 - 27704135
Alignment:
Q  128 aaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  27704094 aaggagagtagatcagatggaggatgttcagatcactagagg 27704135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 50846652 - 50846692
Alignment:
Q  129 aggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||| |||||| ||| |||||||||||    
T  50846652 aggagagtagatcagatggaggataatcatatcactagagg 50846692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 8364643 - 8364685
Alignment:
Q  129 aggagagtagatcagatgcaggatagtcagatcactagaggaa 171  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  8364643 aggagagtagatcagatggaggattgtcagatcactagaggaa 8364685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 14389365 - 14389324
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  14389365 taaggagaatagatcagatggaggatagtcagatcactagag 14389324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 6293583 - 6293539
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagaggaa 171  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||    
T  6293583 taaggagagtaaatcagatgaaggatagtcaaatcactagaggaa 6293539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 579503 - 579545
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||    
T  579503 taaggagagttgatcagatggaggatagtctgatcactagagg 579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 6907024 - 6906982
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||||||| |||||| ||||| |||||    
T  6907024 taaggagagtagatcagatgcagggtagtcaaatcacgagagg 6906982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 21945835 - 21945793
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  21945835 taaggagagtagatcagatggaggatagtcacatcactagagg 21945793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 56439744 - 56439786
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  56439744 taaggagagtagatcagatggaggatagttagatcactagagg 56439786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 28351644 - 28351686
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| ||||||||||||| || |||||    
T  28351644 taaggagagtagatcagatggaggatagtcagattacaagagg 28351686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 34233221 - 34233179
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||    
T  34233221 taaggagagtagatgagatggaggatcgtcagatcactagagg 34233179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 15662055 - 15662014
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    |||||||||||||||| | | |||||||||||||||||||||    
T  15662055 taaggagagtagatcaaacgaaggatagtcagatcactagag 15662014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 25967458 - 25967417
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    |||||||||||||||||||| |||||||| | ||||||||||    
T  25967458 taaggagagtagatcagatgaaggatagttaaatcactagag 25967417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 44065 - 44023
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||  ||||| ||||||||||||||||||||||    
T  44065 taaggagagtagactagatggaggatagtcagatcactagagg 44023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 7531841 - 7531799
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||  |||||||||||||||||    
T  7531841 taaggagagtagatcagatggaggggagtcagatcactagagg 7531799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 29520735 - 29520777
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||||||||| ||||| |||||    
T  29520735 taaggagagtagatcagatggaggatagtcaaatcacaagagg 29520777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 29700361 - 29700403
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||| ||||| |||||||||| |||||||||||    
T  29700361 taaggagagtagattagatggaggatagtcatatcactagagg 29700403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 32931046 - 32931088
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||| ||||||||||| |||||||||| |||||||||||    
T  32931046 taaggagactagatcagatggaggatagtcatatcactagagg 32931088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 38178457 - 38178415
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagagg 169  Q
    |||||||||||||||||||| |||||||||| ||| |||||||    
T  38178457 taaggagagtagatcagatggaggatagtcaaatcgctagagg 38178415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 5908731 - 5908772
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    ||||||||||||||||| || ||||| |||||||||||||||    
T  5908731 taaggagagtagatcaggtggaggatggtcagatcactagag 5908772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 11733832 - 11733873
Alignment:
Q  127 taaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    ||||||||||||||||  || |||||||||||||||||||||    
T  11733832 taaggagagtagatcacgtggaggatagtcagatcactagag 11733873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 24399919 - 24399850
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagtcagattgaaatgtgggttacgatagagtatta 241  Q
    |||||||||| ||||||| ||| | |||||||||||||  ||||||||| ||| ||| |||||| |||||    
T  24399919 aagagaaactattaagaaggatctcgagattaatgagttggattgaaatatggtttatgatagaatatta 24399850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 29520801 - 29520838
Alignment:
Q  172 aagagaaactgttaagaatgatttagagattaatgagt 209  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  29520801 aagagaaactgttaggaacgatttagagattaatgagt 29520838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 35914797 - 35914757
Alignment:
Q  128 aaggagagtagatcagatgcaggatagtcagatcactagag 168  Q
    ||||||||||| ||||||| |||||||||||||| ||||||    
T  35914797 aaggagagtaggtcagatggaggatagtcagatccctagag 35914757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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