View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15828_high_15 (Length: 237)

Name: NF15828_high_15
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15828_high_15
NF15828_high_15
[»] chr3 (7 HSPs)
chr3 (1-221)||(49867893-49868113)
chr3 (15-126)||(49856602-49856713)
chr3 (15-140)||(39559576-39559701)
chr3 (15-137)||(50815359-50815481)
chr3 (15-137)||(50860383-50860505)
chr3 (15-126)||(49973057-49973168)
chr3 (15-118)||(49971736-49971839)
[»] scaffold0543 (2 HSPs)
scaffold0543 (3-118)||(2127-2242)
scaffold0543 (137-221)||(1999-2081)
[»] scaffold0492 (2 HSPs)
scaffold0492 (3-118)||(3673-3788)
scaffold0492 (137-221)||(3545-3627)
[»] chr7 (4 HSPs)
chr7 (20-105)||(19369959-19370044)
chr7 (81-136)||(19935629-19935684)
chr7 (81-136)||(19966768-19966823)
chr7 (78-136)||(19929349-19929407)
[»] chr4 (1 HSPs)
chr4 (15-124)||(31211698-31211807)
[»] chr2 (1 HSPs)
chr2 (3-53)||(6688323-6688373)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49868113 - 49867893
Alignment:
Q  1 gaaggaaccaaaatttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49868113 gaaggaaccaaaatttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaa 49868014  T
Q  101 tatataatgcagaattcaggagtactgaggaccatgacaaatataaagctccaaatgttcatggaattctctgtatgcccaaggaattcagccacatgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49868013 tatataatgcagaattcaggagtactgaggaccatgacaaatataaagctccaaatgttcatggaattatctgtatgcccaaggaattcagccacatgta 49867914  T
Q  201 aacttttctatttatttgaat 221  Q
    |||||||||||||||||||||    
T  49867913 aacttttctatttatttgaat 49867893  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 49856713 - 49856602
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||| ||| ||| ||||||||||||||| ||||||||    
T  49856713 ttgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcagaa 49856614  T
Q  115 ttcaggagtact 126  Q
    |||| |||||||    
T  49856613 ttcaagagtact 49856602  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 39559576 - 39559701
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||||||||||||||| | ||||||||| | ||| ||||| |||| |||||| |||||||| || |||||||||| |||||| |||||||||||||||||    
T  39559576 ttgttccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatttgctaaatatataatgcagaa 39559675  T
Q  115 ttcaggagtactgaggaccatgacaa 140  Q
    |||| ||||| | |||||||||||||    
T  39559676 ttcaagagtattaaggaccatgacaa 39559701  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 50815359 - 50815481
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| || ||||| ||||||||||||| |||||| || ||||| || | |||    
T  50815359 ttgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaa 50815458  T
Q  115 ttcaggagtactgaggaccatga 137  Q
    |||| ||||||| || |||||||    
T  50815459 ttcaagagtactaagcaccatga 50815481  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 50860505 - 50860383
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| || ||||| ||||||||||||| |||||| || ||||| || | |||    
T  50860505 ttgttccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaa 50860406  T
Q  115 ttcaggagtactgaggaccatga 137  Q
    |||| ||||||| || |||||||    
T  50860405 ttcaagagtactaagcaccatga 50860383  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 49973168 - 49973057
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||||||| ||||||||| |||  ||||  |||| |||||||||||||||||  |  |||| | ||||||| |||  |||||||||||||| ||| ||||    
T  49973168 ttgttccaaaatgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaa 49973069  T
Q  115 ttcaggagtact 126  Q
    |||| |||||||    
T  49973068 ttcaagagtact 49973057  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 49971839 - 49971736
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||||||  |||| |||| ||| ||||||||||  || ||||||| || | ||||| |  ||| |||  |||||| ||||||||||||||||||||||||    
T  49971839 ttgttccgaaatgtcttttatcgcatcttacaaagtgttcacttaaaattgacagcagtctaagttggaagtttcaatttgcaaaatatataatgcagaa 49971740  T
Q  115 ttca 118  Q
    ||||    
T  49971739 ttca 49971736  T

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Target: scaffold0543 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 2242 - 2127
Alignment:
Q  3 aggaaccaaaatttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaata 102  Q
    |||| |||||| ||||||||  ||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |||    
T  2242 aggacccaaaagttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagata 2143  T
Q  103 tataatgcagaattca 118  Q
    ||| ||||||||||||    
T  2142 tatcatgcagaattca 2127  T

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Target: scaffold0543; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 2081 - 1999
Alignment:
Q  137 acaaatataaagctccaaatgttcatggaattctctgtatgcccaaggaattcagccacatgtaaacttttctatttatttgaat 221  Q
    ||||||| |||||||||||||||||||||||| | | | |||||||||||||||  ||||||| ||||||  |||||||||||||    
T  2081 acaaatacaaagctccaaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttt--tatttatttgaat 1999  T

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Target: scaffold0492 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 3788 - 3673
Alignment:
Q  3 aggaaccaaaatttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaata 102  Q
    |||| |||||| ||||||||  ||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |||    
T  3788 aggacccaaaagttgttccaagatgtcttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagata 3689  T
Q  103 tataatgcagaattca 118  Q
    ||| ||||||||||||    
T  3688 tatcatgcagaattca 3673  T

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Target: scaffold0492; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 3627 - 3545
Alignment:
Q  137 acaaatataaagctccaaatgttcatggaattctctgtatgcccaaggaattcagccacatgtaaacttttctatttatttgaat 221  Q
    ||||||| |||||||||||||||||||||||| | | | |||||||||||||||  ||||||| ||||||  |||||||||||||    
T  3627 acaaatacaaagctccaaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttt--tatttatttgaat 3545  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 19370044 - 19369959
Alignment:
Q  20 ccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatat 105  Q
    |||| |||||||| ||||||||| ||||| |||||||||||||||||| ||||| |||| |||||| ||| |||||||||||||||    
T  19370044 ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcctaaactgtgagattcaatttgcaaaatatat 19369959  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 19935629 - 19935684
Alignment:
Q  81 gtgagtttccatttgcaaaatatataatgcagaattcaggagtactgaggaccatg 136  Q
    ||||| ||| ||||||||||||||| ||||||||||||| |||| ||| |||||||    
T  19935629 gtgagcttcaatttgcaaaatatattatgcagaattcagaagtattgaagaccatg 19935684  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 19966768 - 19966823
Alignment:
Q  81 gtgagtttccatttgcaaaatatataatgcagaattcaggagtactgaggaccatg 136  Q
    ||||| ||| ||||||||||||||| ||||||||||||| |||| ||| |||||||    
T  19966768 gtgagcttcaatttgcaaaatatattatgcagaattcagaagtattgaagaccatg 19966823  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 19929349 - 19929407
Alignment:
Q  78 attgtgagtttccatttgcaaaatatataatgcagaattcaggagtactgaggaccatg 136  Q
    |||||||| ||| ||||||||||||||| ||||||||||||  |||| ||| |||||||    
T  19929349 attgtgagcttcaatttgcaaaatatattatgcagaattcaaaagtattgaagaccatg 19929407  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 31211698 - 31211807
Alignment:
Q  15 ttgttccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaa 114  Q
    |||| ||||| || |||| || |||||||||||| |||||||||||||     ||  ||||||| |||||| |||  |||||||||||||| ||||||||    
T  31211698 ttgtaccagattgtcttttatatcatcttacaacatgctcacttagaagcataagaagcataaactgtgagcttcagtttgcaaaatatatcatgcagaa 31211797  T
Q  115 ttcaggagta 124  Q
     |||||||||    
T  31211798 ctcaggagta 31211807  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 6688323 - 6688373
Alignment:
Q  3 aggaaccaaaatttgttccagaatgcctttcatctcatcttacaacttgct 53  Q
    ||||||||||  ||||||||||||||||||||||||| || | ||||||||    
T  6688323 aggaaccaaagattgttccagaatgcctttcatctcagctcaaaacttgct 6688373  T

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