View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15828_high_4 (Length: 466)
Name: NF15828_high_4
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 45691490 - 45691944
Alignment:
| Q |
1 |
cagatgatgaaatcaaaaagattgaggcaatgacatctgccaatgaagtgggcgatgtgaaggctgagaatttaagag-tgataaaccttcttattacag |
99 |
Q |
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| T |
45691490 |
cagatgatgaaatcaagaagattgaggcaatgacatctgcaaatgaagtgggcgatgtgaaggctgagagtgtaagagatgataaaccttcttattacag |
45691589 |
T |
|
| Q |
100 |
catgaagagaacgatacagctcaacatcaaactaaatcatggttacttagattgcttgtattccaagctactactagttagttaattgatacagctcagc |
199 |
Q |
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| T |
45691590 |
catgaagagaatgatacagctcaacatcaaactaaatcatggttacttagattgcttgtattccaagctactactagttagttaattgatacagctcagc |
45691689 |
T |
|
| Q |
200 |
atgaagaggaaagtgattcaacaaaaacatcaaaggaccttcctaaggaaacctcaatgaaggcaacacaaaagcaaacaaattacattatatcacaagc |
299 |
Q |
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| T |
45691690 |
atgaagaggaaagtgattcaacaaaaaaatcaaaggaccttcctaaggaaacctcaatgaaggcaacacaaaagcaaacaaattacattatatcacaagc |
45691789 |
T |
|
| Q |
300 |
gaaagacagacgatattaaaatcaagtaatgagtaatatgatgatagacttaacaagttcccgtgatttagtaacatgctttctttctcaccgttgcgat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45691790 |
gaaagacagacgatattaaaatcaagtaatgagtaat---atgatagacttaacaagttcccgtgatttagtaacatgctttctttctcaccgttgcgat |
45691886 |
T |
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| Q |
400 |
gcatagcattagcatacttgctggtttatatactgtgttattttctgttaatattgtt |
457 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
45691887 |
gcatagcattagcatacttgctggtttctatactgtgttattttctgttaattttgtt |
45691944 |
T |
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