View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15828_high_5 (Length: 383)
Name: NF15828_high_5
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 17922631 - 17922275
Alignment:
| Q |
1 |
gtattcacgtctgatactattcatgtctgataattcatatgttaaagatgttcaatatatataatattgatgatattgatgcattatttatcacat---- |
96 |
Q |
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| T |
17922631 |
gtattcacgtctgatactattcatgtctgataattcatatgttaaaggtgttcgatatatataatattgatgctattgatgcattatttatcacatgtca |
17922532 |
T |
|
| Q |
97 |
---atgtttttgtgttatcaatttgactgcattgcttgcagatcttacttgctaatcttgcttttactgcatggtcttagttttttgtttattttgttaa |
193 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17922531 |
catatgtttatgtgttatcaatttgactgtattgcttgcagatcttacttgctaatcttgcttttactgcatggtcttagttttttgtttattttgttaa |
17922432 |
T |
|
| Q |
194 |
aggttttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaactgaaggagactaccagggttcagtctcggccatagaac |
293 |
Q |
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| T |
17922431 |
aggttttcaatgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctctgtcaactgaaggagactaccggggttcagtctcggccatagaac |
17922332 |
T |
|
| Q |
294 |
gtggatacgtctgtgctagtaaagtaccctacccagagttgcaggttagttgtgata |
350 |
Q |
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| T |
17922331 |
gtggatatgtctgtgctagtaaagtaccctacccagagatgcaggttagttgtgata |
17922275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 17956289 - 17956112
Alignment:
| Q |
89 |
tatcacatatgtttttgtgttatcaatttgactgcattgcttgcagatcttacttgctaatcttgcttttactgca---tggtcttagttttttgtttat |
185 |
Q |
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| T |
17956289 |
tatcacatatgtgtatgtgttatcaatttgactgcattgcatgcaaattatacatgctaatgttacttctactacaatatggtcttagttttttgtttat |
17956190 |
T |
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| Q |
186 |
tttgttaaaggttttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaactgaaggag |
263 |
Q |
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| T |
17956189 |
tttgttaacggttttcaacgaagtggaggtcatgtaacatcaactccaagcttgcaaaagctttttcaaatgaaggag |
17956112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 17969613 - 17969494
Alignment:
| Q |
163 |
catggtcttagttttttgtttattttgtt-----aaaggttttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaactg |
257 |
Q |
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| T |
17969613 |
catggtcttagttttttgtttgttttgttttgttaaaggttttcaacaaagttttgttcttgcaacctcaacttacaacatgcaaatgcttcttcagctg |
17969514 |
T |
|
| Q |
258 |
aaggagactaccagggttca |
277 |
Q |
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| T |
17969513 |
attgagactacccgggttca |
17969494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 109 - 344
Target Start/End: Complemental strand, 33581273 - 33581038
Alignment:
| Q |
109 |
tatcaatttgactgcattgcttgcagatcttacttgctaatcttgcttttactgcatggtcttagttttttgtttattttgttaaaggttttcaacgaag |
208 |
Q |
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|||||||||||||||||||| |||| |||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||| |||| ||||||||||| |
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| T |
33581273 |
tatcaatttgactgcattgcatgcaaatcttactagctaatgctgcttctactacatattcttagttttttgtttattttgttgaaggatttcaacgaag |
33581174 |
T |
|
| Q |
209 |
ttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaactgaaggagactaccagggttcagtctcggccatagaacgtggatacgtctgtg |
308 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||| ||| ||||| ||||||| | ||||| |
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| T |
33581173 |
ttgtggtcttgtaacttcaactcacagcttgcaaaggctttgtcaattgaaggagactaccgaggttaagtctccgccttagaatgtggatatgcctgtg |
33581074 |
T |
|
| Q |
309 |
ctagtaaagtaccctacccagagttgcaggttagtt |
344 |
Q |
| |
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|| | |||||| ||||||||| ||||||||||||| |
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| T |
33581073 |
ctgctgaagtacactacccagatttgcaggttagtt |
33581038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 161 - 348
Target Start/End: Complemental strand, 32356529 - 32356342
Alignment:
| Q |
161 |
tgcatggtcttagttttttgtttattttgttaaaggttttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaactgaag |
260 |
Q |
| |
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|||||| || |||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32356529 |
tgcatgttcatagttttttgtttattttattgaaggatttcaacaaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaag |
32356430 |
T |
|
| Q |
261 |
gagactaccagggttcagtctcggccatagaacgtggatacgtctgtgctagtaaagtaccctacccagagttgcaggttagttgtga |
348 |
Q |
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||||||||| ||||||| |||| ||| ||||| ||||||| | |||||||| | |||||| |||||||||||||||||||||| |||| |
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| T |
32356429 |
gagactaccggggttcaatctccgccttagaatgtggatatgcctgtgctactgaagtacgctacccagagttgcaggttagtagtga |
32356342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 8024690 - 8024596
Alignment:
| Q |
257 |
gaaggagactaccagggttcagtctcggccatagaacgtggatacgtctgtgctagtaaagtaccctacccagagttgcaggttagttgtgatag |
351 |
Q |
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| T |
8024690 |
gaaggagactaccagggttcagtctcggccttagaacgtggatatgtctgtgctactaaagtaccctacccagagttgcaggttagttgtgatag |
8024596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 8024950 - 8024847
Alignment:
| Q |
158 |
tactgcatggtcttagttttttgtttattttgttaaa-ggttttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaact |
256 |
Q |
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|||| ||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
8024950 |
tactacattgtcttagttttttgtttattttattaaaaggttatcaacgaagttgtggtcttgcaacttcaacttacagcttgcaaatgctttggcaact |
8024851 |
T |
|
| Q |
257 |
gaag |
260 |
Q |
| |
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|||| |
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|
| T |
8024850 |
gaag |
8024847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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