View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15828_high_8 (Length: 370)
Name: NF15828_high_8
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 41022674 - 41023010
Alignment:
| Q |
16 |
ataatcttaacaaaactacaatattttttaaaattgacaaatttgccacacattttaactttttaagagctacattatatattttcacttctcaaatcat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41022674 |
ataatcttaacaaaactacaatattttttaaaattgacaaatttgccacacattttaactttttaagagctacattatatattttcacttctcaaatcat |
41022773 |
T |
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| Q |
116 |
ataccaaaaatctcaatgttttttcttcagaatcaatcaataaggattaaattgaactaaccgccattcgctcacaagcaacatcgaacgcattctgatt |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41022774 |
ataccaaaaatctcaatgttttttcttcagaaacaatcaataaggattaaattgaactaaccgccattctctcacaagcaacatcgaacgcattctgatt |
41022873 |
T |
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| Q |
216 |
cagcggcataacagcaaccaaatcataagtcttcaaaatcggattccccgcattcaacgcattcgcctgtaacgtattctcaacacaaacagtaattcgc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
41022874 |
cagcggcataacagcaaccaaatcataagtcttcaaaatcggattccccgcattcaacgcattcgcctgcaacgtattctcaacacaaacagtaatccgc |
41022973 |
T |
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| Q |
316 |
gtgtactgccgaaacggagtagaagccgaaactccaa |
352 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
41022974 |
gtgtactgccgaaacggagtagaagccgaaactccaa |
41023010 |
T |
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