View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15828_low_1 (Length: 563)

Name: NF15828_low_1
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15828_low_1
NF15828_low_1
[»] chr8 (12 HSPs)
chr8 (11-530)||(12188503-12189020)
chr8 (11-530)||(12432931-12433448)
chr8 (11-370)||(12177182-12177541)
chr8 (11-370)||(12421610-12421969)
chr8 (3-190)||(6310342-6310529)
chr8 (3-190)||(32633309-32633496)
chr8 (23-259)||(5549762-5549998)
chr8 (152-190)||(6062740-6062778)
chr8 (23-259)||(5607931-5608167)
chr8 (23-259)||(5627203-5627439)
chr8 (152-189)||(6071826-6071863)
chr8 (146-190)||(14404759-14404803)
[»] chr3 (1 HSPs)
chr3 (146-189)||(23455160-23455203)
[»] chr6 (2 HSPs)
chr6 (146-192)||(33264700-33264746)
chr6 (146-192)||(33412004-33412050)
[»] chr2 (1 HSPs)
chr2 (146-192)||(17438811-17438857)
[»] scaffold1749 (1 HSPs)
scaffold1749 (146-187)||(50-91)
[»] scaffold0428 (1 HSPs)
scaffold0428 (146-187)||(8811-8852)
[»] scaffold0363 (1 HSPs)
scaffold0363 (146-190)||(14050-14094)


Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 12188503 - 12189020
Alignment:
11 aagatccttccctagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagct 110  Q
    |||||| | |||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
12188503 aagatcttcccctagtagcttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactacct 12188602  T
111 tcatatatggaagataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaat 210  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |    
12188603 tcatatctggaagataccttctgaaatatggcagcagcaagggttgtctttcctatgcctcccatgccccaaattccaatagttctaacttctcttgagt 12188702  T
211 cattttttaataatgattcaatgcttgaatagttttcatctggtatgaacaaacatctaagttcattggtatacttttgattcagattttgggaaactac 310  Q
    ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||  |||| |    
12188703 catcttttaaaaatgattcaatgcttgaatagtcttcatctggtatgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgc 12188802  T
311 tttgatgatgtcttcaatcaagtcattttcagtcctaaaatataagaatactgataaatgttagtatataaaaggagactataaattagttaataattag 410  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||||||||||||||||||    
12188803 tttgatgatgtctccaatcaagtcagattcagtcctaaaatataagaatac-gataaatgttagagtataaaaggattctataaattagttaataattag 12188901  T
411 acgatacaatataattcaagaaaatttgtatccattttataaccaaagaaagaaataccaaatagaatactaaaaaatgatcatccccat-tttctaaga 509  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| | |||||| |||||||| || ||| |||||    
12188902 aggatacaatataattcaagaaaatttgtatccattttataacc-aagaaagaaatagcaagtagaataat-aaaaattatcatccctatatttgtaaga 12188999  T
510 aacaaatcgttcaaaagtgta 530  Q
    |||||||| || |||| ||||    
12189000 aacaaatcatttaaaaatgta 12189020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 12432931 - 12433448
Alignment:
11 aagatccttccctagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagct 110  Q
    |||||| | |||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
12432931 aagatcttcccctagtagcttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaagaagcaactacct 12433030  T
111 tcatatatggaagataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaat 210  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |    
12433031 tcatatctggaagataccttctgaaatatggcagcagcaagggttgtctttcctatgcctcccatgccccaaattccaatagttctaacttctcttgagt 12433130  T
211 cattttttaataatgattcaatgcttgaatagttttcatctggtatgaacaaacatctaagttcattggtatacttttgattcagattttgggaaactac 310  Q
    ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||  |||| |    
12433131 catcttttaaaaatgattcaatgcttgaatagtcttcatctggtatgaacaaacatctaagctcatttgtatacttttgattcaatttttggagaactgc 12433230  T
311 tttgatgatgtcttcaatcaagtcattttcagtcctaaaatataagaatactgataaatgttagtatataaaaggagactataaattagttaataattag 410  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||||||||||||||||||    
12433231 tttgatgatgtctccaatcaagtcagattcagtcctaaaatataagaatac-gataaatgttagagtataaaaggattctataaattagttaataattag 12433329  T
411 acgatacaatataattcaagaaaatttgtatccattttataaccaaagaaagaaataccaaatagaatactaaaaaatgatcatccccat-tttctaaga 509  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| | |||||| |||||||| || ||| |||||    
12433330 aggatacaatataattcaagaaaatttgtatccattttataacc-aagaaagaaatagcaagtagaataat-aaaaattatcatccctatatttgtaaga 12433427  T
510 aacaaatcgttcaaaagtgta 530  Q
    |||||||| || |||| ||||    
12433428 aacaaatcatttaaaaatgta 12433448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 12177182 - 12177541
Alignment:
11 aagatccttccctagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagct 110  Q
    |||||| | ||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
12177182 aagatcttcccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactacct 12177281  T
111 tcatatatggaagataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaat 210  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||    
12177282 tcatacatggaagataccttctgaaatatggcagcagcaagggttgtctttcctatgcctcccatgccccaaattccaatagttctaacttctcttgaat 12177381  T
211 cattttttaataatgattcaatgcttgaatagttttcatctggtatgaacaaacatctaagttcattggtatacttttgattcagattttgggaaactac 310  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  ||||||   ||| |    
12177382 ctacttttaataatgattcaatgcttgaatagttttcatctggtatgaacaagcatctaagttcatttgtatacttttgattcaatttttggaggactgc 12177481  T
311 tttgatgatgtcttcaatcaagtcattttcagtcctaaaatataagaatactgataaatg 370  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||    
12177482 tttgatgatgtctccaatcaagtcagcttcagtcctaaaatataagaatacagataaatg 12177541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 12421610 - 12421969
Alignment:
11 aagatccttccctagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagct 110  Q
    |||||| | ||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
12421610 aagatcttcccctagtaacttagaaagaagtctgttgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactacct 12421709  T
111 tcatatatggaagataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaat 210  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||    
12421710 tcatacatggaagataccttctgaaatatggcagcagcaagggttgtctttcctatgcctcccatgccccaaattccaatagttctaacttctcttgaat 12421809  T
211 cattttttaataatgattcaatgcttgaatagttttcatctggtatgaacaaacatctaagttcattggtatacttttgattcagattttgggaaactac 310  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  ||||||   ||| |    
12421810 ctacttttaataatgattcaatgcttgaatagttttcatctggtatgaacaagcatctaagttcatttgtatacttttgattcaatttttggaggactgc 12421909  T
311 tttgatgatgtcttcaatcaagtcattttcagtcctaaaatataagaatactgataaatg 370  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||    
12421910 tttgatgatgtctccaatcaagtcagcttcagtcctaaaatataagaatacagataaatg 12421969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 6310342 - 6310529
Alignment:
3 tcaataccaagatccttccct-agtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaag 101  Q
    |||||| ||||||| |||||| |||||||  ||||| ||| || || |||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||    
6310342 tcaatatcaagatc-ttccctgagtaacttggaaagaagtttgttgcatgtgtaattgatcccatgtctctttgatacttctgttaccttttctaagaag 6310440  T
102 caactagcttcatatatggaagataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaat 190  Q
    |||||  |||||||| |  |||| ||| | ||||| || | |||||||||||||||||| ||| | |||||||| ||||||| ||||||    
6310441 caactgccttcatatttaaaagagaccctttgaaacatagcagcagcaagggttgtcttacctgtgcctcccataccccaaagtccaat 6310529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 32633496 - 32633309
Alignment:
3 tcaataccaagatccttccctagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagc 102  Q
    |||||| ||||||| | || |||||||| |||||| ||| || || || || || |||  ||||| || |||||| ||||||| |||||||||| |||||    
32633496 tcaatatcaagatcttcccttagtaacttagaaagaagtttgttgcatatgaaattgattccatgcctttttgatacttctgtcacattttctaagaagc 32633397  T
103 aactagcttcatatatggaagataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaat 190  Q
    ||||  |||||||  || |||| ||| | ||||| |  | |||||||||||||||||| ||||| || ||||||||||||| ||||||    
32633396 aactgccttcatacttgaaagagaccctttgaaacaaagcagcagcaagggttgtcttacctatgccccccatgccccaaagtccaat 32633309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 5549998 - 5549762
Alignment:
23 tagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagcttcatatatggaa 122  Q
    |||||||| |||||| ||| || || |||||||| |||  ||| | || |||||| ||||||| || ||||| | |||||||||  | |||||| || ||    
5549998 tagtaacttagaaagaagtttgttgcatgtgtaattgattccacgactttttgatacttctgtaaccttttcaaagaagcaactgccatcatatttgaaa 5549899  T
123 gataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaatcattttttaata 222  Q
    || ||| | ||||| || | ||  |||||||||||||| || || |||||||| ||||||| ||||||  ||  ||| ||  ||||||||  ||||| ||    
5549898 gagaccctttgaaacatagcagtggcaagggttgtcttaccaatgcctcccataccccaaactccaatgatttgaacttctgttgaatcaaattttatta 5549799  T
223 atgattcaatgcttgaatagttttcatctggtatgaa 259  Q
    | |||| ||||||   |||||||||||| ||||||||    
5549798 aagattgaatgctccgatagttttcatcaggtatgaa 5549762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 6062740 - 6062778
Alignment:
152 ggttgtctttcctatacctcccatgccccaaattccaat 190  Q
    ||||||||||||||| |||||||||||||||||||||||    
6062740 ggttgtctttcctattcctcccatgccccaaattccaat 6062778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 5607931 - 5608167
Alignment:
23 tagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagcttcatatatggaa 122  Q
    |||||||| | |||| ||| || || |||||||| |||  ||||| || |||||| ||||||| || || || | |||||||||  | |||||| || ||    
5607931 tagtaacttacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgccatcatatttgaaa 5608030  T
123 gataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaatcattttttaata 222  Q
    || ||| | ||||| || | ||  |||||||||||||| ||||| |||||||| ||||||| ||||||  ||  ||| ||  |||| |||  ||||| ||    
5608031 gagaccctttgaaacatagcagtggcaagggttgtcttacctatgcctcccataccccaaagtccaatgatttgaacttctgttgagtcaaattttatta 5608130  T
223 atgattcaatgcttgaatagttttcatctggtatgaa 259  Q
    | |||| || |||  ||||||||||||| ||||||||    
5608131 aagattgaacgctccaatagttttcatcaggtatgaa 5608167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 5627439 - 5627203
Alignment:
23 tagtaactgagaaagtagtctgctgtatgtgtaactgagcccatgtctctttgattcttctgtgacattttctaggaagcaactagcttcatatatggaa 122  Q
    |||||||| | |||| ||| || || |||||||| |||  ||||| || |||||| ||||||| || || || | |||||||||  | |||||| || ||    
5627439 tagtaacttacaaagaagtttgttgcatgtgtaattgattccatgactttttgatacttctgtcaccttctcaaagaagcaactgccatcatatttgaaa 5627340  T
123 gataccttctgaaatatggtagcagcaagggttgtctttcctatacctcccatgccccaaattccaatagttctaacctcgcttgaatcattttttaata 222  Q
    || ||| | ||||| || | ||  |||||||||||||| ||||| |||||||| ||||||| ||||||  ||  ||| ||  |||| |||  ||||| ||    
5627339 gagaccctttgaaacatagcagtggcaagggttgtcttacctatgcctcccataccccaaagtccaatgatttgaacttctgttgagtcaaattttatta 5627240  T
223 atgattcaatgcttgaatagttttcatctggtatgaa 259  Q
    | |||| || |||  ||||||||||||| ||||||||    
5627239 aagattgaacgctccaatagttttcatcaggtatgaa 5627203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 6071826 - 6071863
Alignment:
152 ggttgtctttcctatacctcccatgccccaaattccaa 189  Q
    |||||||||||| ||||| |||||||||||||||||||    
6071826 ggttgtctttcccataccgcccatgccccaaattccaa 6071863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 14404803 - 14404759
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattccaat 190  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||    
14404803 agcaagggttgtcttacctgtgcctcccataccccaaattccaat 14404759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 23455160 - 23455203
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattccaa 189  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
23455160 agcaagggttgtctttcctatgccacccatgccccatattccaa 23455203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 33264700 - 33264746
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattccaatag 192  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||    
33264700 agcaagggttgtcttccctattcctcccatcccccaaattcctatag 33264746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 33412004 - 33412050
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattccaatag 192  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||    
33412004 agcaagggttgtctttcctattccgcccattccacaaattccaatag 33412050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 17438857 - 17438811
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattccaatag 192  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||    
17438857 agcaagggttgtcttccctattcctcccatcccccaaattcctatag 17438811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 50 - 91
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattcc 187  Q
    ||||||||||||||| ||||| |||||||| |||||||||||    
50 agcaagggttgtcttccctattcctcccatcccccaaattcc 91  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 8811 - 8852
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattcc 187  Q
    ||||||||||||||| ||||| |||||||| |||||||||||    
8811 agcaagggttgtcttccctattcctcccatcccccaaattcc 8852  T

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Target: scaffold0363 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 14050 - 14094
Alignment:
146 agcaagggttgtctttcctatacctcccatgccccaaattccaat 190  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||    
14050 agcaagggttgtcttacctgtgcctcccataccccaaattccaat 14094  T

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