View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15828_low_12 (Length: 357)
Name: NF15828_low_12
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_low_12 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 104 - 347
Target Start/End: Original strand, 49868345 - 49868588
Alignment:
| Q |
104 |
tcaggtgggttaaattatgaaacatgcattgtaatgtaatggaccctgtctgcatgagctataaagttaaagagtaaactaattaacttgttgaatttaa |
203 |
Q |
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| T |
49868345 |
tcaggtgggttaaattatgaaacatgcattgtaatgtaatggaccctgtctgcatgagctataaagttaaagagtgaactaattaacttgttgaatttaa |
49868444 |
T |
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| Q |
204 |
gagactaatgcagagattgttggcgttatgaagccaatcatactcaataaaattatcagaaacgttagctcttaccaaaattggataggcttaaaagcac |
303 |
Q |
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| T |
49868445 |
gagactaatgcagagattgttggcgttatgaagccaatcatactcaataaaattatcagaaacgttagctcttaccaaaattggataggcttaaaagcac |
49868544 |
T |
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| Q |
304 |
cttaagacctccataattatttttctttaaacttaaatcctttg |
347 |
Q |
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| T |
49868545 |
cttaagacctccataattatttttctttaaacttaaatcctttg |
49868588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 49868210 - 49868293
Alignment:
| Q |
19 |
gaaaacaaagggcaatggaacgttaaaaaacctcatgaatgataagagtttgaagtttagggaaattttcaagcagttcaatca |
102 |
Q |
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| T |
49868210 |
gaaaacaaagggcaatggaacgttaaaaaaccttatgaatgataagagtttgaagtttagggaaattttcaagcagttcaatca |
49868293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 39559519 - 39559486
Alignment:
| Q |
51 |
tcatgaatgataagagtttgaagtttagggaaat |
84 |
Q |
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| T |
39559519 |
tcatgaatgataagagtttgaagtttggggaaat |
39559486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 50815232 - 50815184
Alignment:
| Q |
48 |
acctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
96 |
Q |
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| T |
50815232 |
acctcacgaatgataagagtttgaagcttggggaaatttggaagcagtt |
50815184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 50860632 - 50860680
Alignment:
| Q |
48 |
acctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
96 |
Q |
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| T |
50860632 |
acctcacgaatgataagagtttgaagcttggggaaatttggaagcagtt |
50860680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 2368 - 2420
Alignment:
| Q |
44 |
aaaaacctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
96 |
Q |
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| T |
2368 |
aaaaacctcttcaatgataagagtttgaagtttggggaaattttcaagcagtt |
2420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 2563 - 2596
Alignment:
| Q |
178 |
taaactaattaacttgttgaatttaagagactaa |
211 |
Q |
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| T |
2563 |
taaactaattaactttttgaatttaagagactaa |
2596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 3914 - 3966
Alignment:
| Q |
44 |
aaaaacctcatgaatgataagagtttgaagtttagggaaattttcaagcagtt |
96 |
Q |
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||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3914 |
aaaaacctcttcaatgataagagtttgaagtttggggaaattttcaagcagtt |
3966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 4109 - 4142
Alignment:
| Q |
178 |
taaactaattaacttgttgaatttaagagactaa |
211 |
Q |
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| T |
4109 |
taaactaattaactttttgaatttaagagactaa |
4142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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