View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15828_low_2 (Length: 536)
Name: NF15828_low_2
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 51001087 - 51000578
Alignment:
| Q |
1 |
gttccagtctcctgtttttaatatctgtatgttgtctggtgccatttttctcccttagtttgcattttactttggtctcatgagttgcctaacttattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
51001087 |
gttccagtctcctgtttttaatatctgtatgttgtctggtgccatttttctcccttaatttgcattttactttggtctc--------------ttattgg |
51001002 |
T |
|
| Q |
101 |
ttctattgttcaatgtaggatggtagtgttccagtcttgcattgcttctatgctcgtggtgaggacaatgcaaactttcggaggagagtttatcggatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51001001 |
ttctattgttcaatgtaggatggtagtgttgcagtcttgcattgcttctatgctcgtggtgaggacaatgcaaactttcggaggagagtttatcggatgc |
51000902 |
T |
|
| Q |
201 |
ttgatgagtgagtttttgtaatcccgtgtttaggatcaaggg-tttatatcattg-aatttttacaaagaatattcagcatggttcttacgttgttaatt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51000901 |
ttgatgagtgagtttttgtaatcccgtgtttaggatcaagggttttatatcattgtaatttttacaaagaatattcagcatggttcttacgttgttaatt |
51000802 |
T |
|
| Q |
299 |
gctattttatccggatgtttttca-----nnnnnnnnnnnnnaagtttagagaaagtaatagactgagtcttaattcaagcctgaaccttgcaaggttgc |
393 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51000801 |
gctattttatccagatgtttttcattttttttttttttttttaag-ttagagaaagtaatagactgagtcttaattcaagcctgaaccttgcaaggttgc |
51000703 |
T |
|
| Q |
394 |
accatgtgttcatgccctttttacatggttatagtgataaataaaataaaaaatcaacttaaacatattcttttgaattgcaggcagttcaaggacattg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51000702 |
accatgtgttcatgccctttttacatggttatagtgataaataaaataaaaaatcaacttaaacatattcttttgaattgcaggcagttcaaggacattg |
51000603 |
T |
|
| Q |
494 |
tcctcgtgcattacggagaggtatg |
518 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51000602 |
tcctcgtgcattacggagaggtatg |
51000578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University