View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15828_low_5 (Length: 436)
Name: NF15828_low_5
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 1880773 - 1880479
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1880773 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgagaactctttcaagatatgcacctgtga |
1880674 |
T |
|
| Q |
118 |
aatgaatataggattaggaactaaataaaaagaaatgaagaaatatttacttgtaaaggattttgattctatgaaaaaacaagtatcttgcatattttcg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1880673 |
aatgaatataggattaggaactaaataaaaagaaatgaagaaatatttacttgtaaaggatattgattctatgaaaaaacaagtatcttgcatattttcg |
1880574 |
T |
|
| Q |
218 |
agaagagtaatactagcgatactttctcatttcccttaacacgtatttttcaacatattaataaattcaaattgaagacatcaaattgagacatt |
312 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1880573 |
agaagaataatactagcgatactttctcatttcccttaacacgtatttttcaacatattaataaatttaaattgaagacatcaaattgagacatt |
1880479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 1892917 - 1892796
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
1892917 |
ataacaatgctacaactgttgatatgatggtggcagtaatggtgtataacaagactaaagttacttcgtcagggaactctttcaagatatgcacctgtga |
1892818 |
T |
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| Q |
118 |
aatgaatataggattaggaact |
139 |
Q |
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|||||||||||||||| ||||| |
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| T |
1892817 |
aatgaatataggattatgaact |
1892796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 427
Target Start/End: Complemental strand, 1880479 - 1880386
Alignment:
| Q |
336 |
tcaatacatattgttatattcagtaacttttatttttt--caaaagtgtttgtgtgttagtgttatgtcccatcttcgtgttttgaagtataat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
1880479 |
tcaatacatattgttatattcagtaacttttattttttttcaaaagtgtttgtgtgttagtgttaagtcccgtcttcgtgttttgaagtataat |
1880386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 1913621 - 1913516
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
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|
||||||| ||||||||||| |||||||| || |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1913621 |
ataacaaagctacaactgtagatatgattgtggcagttatggaatatatcaagactaaagttagttcatctgggaactctttcaagatatgtacctgtga |
1913522 |
T |
|
| Q |
118 |
aatgaa |
123 |
Q |
| |
|
|||||| |
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|
| T |
1913521 |
aatgaa |
1913516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 1903546 - 1903434
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
| |
|
||||||| ||||||||| | ||||||||||| |||||| ||| ||| ||||| | || ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1903546 |
ataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtga |
1903447 |
T |
|
| Q |
118 |
aatgaatatagga |
130 |
Q |
| |
|
|||||||| |||| |
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|
| T |
1903446 |
aatgaataaagga |
1903434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 1907779 - 1907667
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
| |
|
||||||| ||||||||| | ||||||||||| |||||| ||| ||| ||||| | || ||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1907779 |
ataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtga |
1907680 |
T |
|
| Q |
118 |
aatgaatatagga |
130 |
Q |
| |
|
|||||||| |||| |
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|
| T |
1907679 |
aatgaataaagga |
1907667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 1888069 - 1887959
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||| ||| | ||||||||| ||| ||||||||||||||||||||| | ||| |||| ||| |
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| T |
1888069 |
ataacaatgctacaactgttgataagatggtggcagtaatggagtaaagcaagactaatgttggttcatctgggaactctttcaaaacatgtacctatga |
1887970 |
T |
|
| Q |
118 |
aatgaatatag |
128 |
Q |
| |
|
||||||||||| |
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|
| T |
1887969 |
aatgaatatag |
1887959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 1898246 - 1898134
Alignment:
| Q |
18 |
ataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaaagttacttcatctgggaactctttcaagatatgcacctgtga |
117 |
Q |
| |
|
||||||| ||||||||| | ||||||||||| |||||| ||||||| | |||| || ||||| |||||||||||||||||||| |||||| |||||||| |
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| T |
1898246 |
ataacaaagctacaactatagatatgatggtggcagttgtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtga |
1898147 |
T |
|
| Q |
118 |
aatgaatatagga |
130 |
Q |
| |
|
|||||||| |||| |
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|
| T |
1898146 |
aatgaataaagga |
1898134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 1898095 - 1898039
Alignment:
| Q |
139 |
taaataaaaagaaatgaagaaatatttacttgtaaaggattttgattctatgaaaaa |
195 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
1898095 |
taaataacaagaaatgaagaaatatttacttgtaaaggatttggattctatggaaaa |
1898039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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