View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15828_low_6 (Length: 423)
Name: NF15828_low_6
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15828_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 18921921 - 18921530
Alignment:
| Q |
20 |
aaattatgaaatctttaaatggggatttaggagtaacatatttagatatttagataaacggagagatcagacatcttatataggctataacaaaaaagga |
119 |
Q |
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| T |
18921921 |
aaattatgaaatatttaaatggggatttaagagtaacatatttagatatttagataaaaggagagatcagacatcttatataggctataacaaaaaagga |
18921822 |
T |
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| Q |
120 |
tttgtttaagaaacacaaaacaaaagataacttggagtaattcaccctacagtaaattctgcaaaaactgtttctagggtgaccgtttagttataaatgt |
219 |
Q |
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| T |
18921821 |
tttgtttaagaaaaacaaaacaaaagataacttggagtaattcaccctacagtaaattctgcaaaaactgtttctagggtgaccgtttagttataaatgt |
18921722 |
T |
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| Q |
220 |
ccctttttatttcaatgatgtaattcccaattaaatataaatgaaaatgatgttgtatgttaaaggaagtgttggtgtatgcagaaatgtatgccatttt |
319 |
Q |
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| T |
18921721 |
ccctttttatttcaatgatgtaattcccaattaaatataaatgaaactgatgttgtatgttaaaggaagtgttggtgtatgcagaaatgtatgccatttt |
18921622 |
T |
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| Q |
320 |
cacagaaataaataaaatcataatgattaattcgtagttcaaacctcatgtagaagtgttgacatgtatataaatggctggtgtacaatatt |
411 |
Q |
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| T |
18921621 |
cacagaaataaataaaatcataatgattaattcttagttcaaacctcatgtagaagtgttgacatgtatataaatggctggtatacaatatt |
18921530 |
T |
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