View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15828_low_9 (Length: 377)

Name: NF15828_low_9
Description: NF15828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15828_low_9
NF15828_low_9
[»] chr4 (23 HSPs)
chr4 (5-356)||(2033809-2034176)
chr4 (107-359)||(25516247-25516512)
chr4 (107-212)||(50064831-50064936)
chr4 (221-359)||(25537319-25537456)
chr4 (107-212)||(25537173-25537279)
chr4 (221-359)||(50064976-50065112)
chr4 (26-69)||(44189003-44189046)
chr4 (26-77)||(10564473-10564524)
chr4 (26-77)||(21052565-21052616)
chr4 (30-71)||(10204846-10204887)
chr4 (298-367)||(15784484-15784553)
chr4 (26-71)||(28435262-28435307)
chr4 (26-67)||(32006502-32006543)
chr4 (44-73)||(54587920-54587949)
chr4 (26-70)||(897427-897471)
chr4 (30-70)||(2587715-2587755)
chr4 (31-71)||(22411771-22411811)
chr4 (49-77)||(34968017-34968045)
chr4 (34-70)||(37462121-37462157)
chr4 (30-97)||(38416063-38416128)
chr4 (30-70)||(38453271-38453311)
chr4 (26-70)||(43722767-43722811)
chr4 (30-70)||(53190301-53190341)
[»] chr5 (16 HSPs)
chr5 (1-212)||(11017152-11017361)
chr5 (221-367)||(11017408-11017553)
chr5 (3-212)||(2642640-2642846)
chr5 (221-359)||(2315518-2315655)
chr5 (221-359)||(2642463-2642600)
chr5 (111-212)||(2315695-2315798)
chr5 (148-202)||(14434629-14434682)
chr5 (247-353)||(42193885-42193992)
chr5 (28-77)||(39143718-39143767)
chr5 (46-97)||(3052203-3052252)
chr5 (30-71)||(19068453-19068494)
chr5 (30-70)||(6624782-6624822)
chr5 (118-154)||(14434689-14434725)
chr5 (50-97)||(21657388-21657433)
chr5 (30-70)||(26409259-26409299)
chr5 (45-77)||(42854328-42854360)
[»] chr3 (9 HSPs)
chr3 (5-212)||(37920873-37921079)
chr3 (5-212)||(35126146-35126350)
chr3 (221-359)||(36432035-36432172)
chr3 (5-212)||(36431790-36431995)
chr3 (221-359)||(35125969-35126106)
chr3 (221-359)||(37920696-37920833)
chr3 (149-212)||(9308633-9308696)
chr3 (26-71)||(42269300-42269345)
chr3 (36-72)||(52508276-52508312)
[»] chr8 (15 HSPs)
chr8 (221-367)||(7838799-7838945)
chr8 (26-212)||(989452-989636)
chr8 (107-212)||(7838992-7839098)
chr8 (221-359)||(989275-989412)
chr8 (130-212)||(13958883-13958965)
chr8 (149-195)||(33881195-33881241)
chr8 (1-73)||(13958788-13958860)
chr8 (23-77)||(1230669-1230723)
chr8 (26-64)||(37938497-37938535)
chr8 (20-70)||(41625190-41625240)
chr8 (23-77)||(42575970-42576024)
chr8 (26-71)||(8717489-8717534)
chr8 (26-70)||(6235566-6235610)
chr8 (21-77)||(10320493-10320549)
chr8 (30-70)||(33451364-33451404)
[»] chr6 (12 HSPs)
chr6 (221-367)||(30639105-30639251)
chr6 (1-212)||(30639298-30639511)
chr6 (111-212)||(11884-11985)
chr6 (148-198)||(3185566-3185616)
chr6 (221-310)||(9086-9174)
chr6 (20-70)||(24248161-24248211)
chr6 (47-77)||(35110077-35110107)
chr6 (26-71)||(10018402-10018446)
chr6 (26-71)||(24623331-24623376)
chr6 (126-154)||(3185623-3185651)
chr6 (26-70)||(11456390-11456434)
chr6 (26-77)||(34828308-34828360)
[»] chr7 (7 HSPs)
chr7 (36-77)||(21164766-21164807)
chr7 (26-77)||(44558782-44558833)
chr7 (26-63)||(7946813-7946850)
chr7 (21-70)||(37451252-37451301)
chr7 (27-67)||(20205825-20205865)
chr7 (30-70)||(24656976-24657016)
chr7 (45-77)||(34897531-34897563)
[»] chr2 (3 HSPs)
chr2 (37-75)||(41939118-41939156)
chr2 (27-71)||(28202409-28202453)
chr2 (26-70)||(30978364-30978408)
[»] chr1 (5 HSPs)
chr1 (36-74)||(30248066-30248104)
chr1 (26-74)||(19396202-19396250)
chr1 (26-70)||(34521205-34521249)
chr1 (26-70)||(43611426-43611470)
chr1 (26-70)||(48131243-48131287)
[»] scaffold0122 (1 HSPs)
scaffold0122 (24-64)||(31176-31216)
[»] scaffold0066 (1 HSPs)
scaffold0066 (26-97)||(17506-17575)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 2034176 - 2033809
Alignment:
Q  5 cttatttattaattatccc-gcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccnnnnn 103  Q
    |||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||||| |||||| || |||  ||||||| | |||||||||         
T  2034176 cttatttattaagtatccccgtgagtttagctcagttggtatggataatgcataatatatttaaggtctggggt--tcaaatctcggacaccaccaaaat 2034079  T
Q  104 nnntctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaa-aaaattg 202  Q
       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  2034078 aaatctcttatttattaagttcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagaaaaaaattg 2033979  T
Q  203 gaactttgattgtatgtg-----------------ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataacc 285  Q
    | ||||||||||||| ||                 ||||||||||||||||| ||| |||||||||||||||||| |||||||| | || ||||| ||||    
T  2033978 ggactttgattgtatatgttgttgtgattgtgattttgttggtgaattaccaccatcactcatcaacaaattcttcacatgactactaa-aaatagaacc 2033880  T
Q  286 acgaggaagttctggattgtttgattatgtctttggaggaagtggaaatagcaatgataaaggtgatagtg 356  Q
    || | |||||| |||||| ||||||||||| ||||||||||||||||||| ||||||| || |||||||||    
T  2033879 accaagaagttatggattatttgattatgtttttggaggaagtggaaataacaatgatgaaagtgatagtg 2033809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 107 - 359
Target Start/End: Complemental strand, 25516512 - 25516247
Alignment:
Q  107 tctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattgg--- 203  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||       
T  25516512 tctcttatttattatgttcaagttaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagaaaaaattgggac 25516413  T
Q  204 -----------aactttgattgtatgtgttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgagga 292  Q
               |||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| | || ||| |||| ||||| || ||| | ||    
T  25516412 tttgatgttagaactttgattgtatattttgttggtgaattacaatcatgactcatcaacaaattcttcatataactaccaa-aaataaaatcaccaaga 25516314  T
Q  293 agttctggattgtttgattatgtctttggaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    |||| |||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  25516313 agttgtggattatttaattatgtctttggaggaagtggaaataacaatgatgaaggtgatagtggaa 25516247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 50064831 - 50064936
Alignment:
Q  107 tctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattggaac 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||    
T  50064831 tctcttatttattaagttcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagaaaaaattgagac 50064930  T
Q  207 tttgat 212  Q
    ||||||    
T  50064931 tttgat 50064936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 221 - 359
Target Start/End: Original strand, 25537319 - 25537456
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| ||||||| |||||||||||||| | |||||| |||| ||||| || ||| | ||||||||||||| ||||||||||||||||    
T  25537319 ttgttggtgaattaccaccatgacttatcaacaaattcttcatatgactaccaa-aaatagaatcaccatgaagttctggattatttgattatgtctttg 25537417  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  25537418 gaggaagtggaaataacaatgatgaaggtgatagtggaa 25537456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 25537173 - 25537279
Alignment:
Q  107 tctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagag-aaaaaattggaa 205  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| || |||||||||| |    
T  25537173 tctcttatttattatgttcaaggtaattttaaattgacactcttaatttgagtatttagataacaaatactagatgaaactttaaagaaaaaaattggga 25537272  T
Q  206 ctttgat 212  Q
    |||||||    
T  25537273 ctttgat 25537279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 359
Target Start/End: Original strand, 50064976 - 50065112
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    |||||| ||||||||||  ||||||||||||||| ||||| | |||||| |||| ||||| |||||| |  ||||| |||||| ||||||||||||||||    
T  50064976 ttgttgttgaattaccactatgactcatcaacaa-ttcttcatatgactaccaa-aaatagaaccaccaacaagttatggattatttgattatgtctttg 50065073  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  50065074 gaggaagtggaaataacaatgatgaaggtgatagtggaa 50065112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 44189046 - 44189003
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaagg 69  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||    
T  44189046 gagtttagctcagttggcatggataatgcataatatatgcaagg 44189003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 10564524 - 10564473
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    ||||||||| ||||||| ||||| ||| ||||||||||||||||| ||||||    
T  10564524 gagtttagctcagttggtatggacaatacataatatatgtaaggtctgaggt 10564473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 21052616 - 21052565
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    ||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||    
T  21052616 gagtttagctcagttggtatggataatacataatatatgcaaggtatgaggt 21052565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 10204846 - 10204887
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||    
T  10204846 ttagctcagttggtatggacaatgcataatatatgtaaggtt 10204887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 15784484 - 15784553
Alignment:
Q  298 tggattgtttgattatgtctttggaggaagtggaaatagcaatgataaaggtgatagtggaagttatgat 367  Q
    |||||||||| ||||||| |||| | |||||||||||| |||| || ||||| |||  ||||||||||||    
T  15784484 tggattgtttcattatgtatttgaaagaagtggaaataacaatcatgaaggtaataacggaagttatgat 15784553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 28435307 - 28435262
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  28435307 gagtttagctcagttggtatggacaatgcataatatatgcaaggtt 28435262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 32006502 - 32006543
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaa 67  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  32006502 gagtttagctcagttggtagggataatgcataatatatgtaa 32006543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 54587920 - 54587949
Alignment:
Q  44 atggataatgcataatatatgtaaggtttg 73  Q
    ||||||||||||||||||||||||||||||    
T  54587920 atggataatgcataatatatgtaaggtttg 54587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 897427 - 897471
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  897427 gagtttagctcagttggtatggacaatgtataatatatgtaaggt 897471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 2587755 - 2587715
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| || |||| |||||||||||||||||||||||||||    
T  2587755 ttagctcaattggtatggataatgcataatatatgtaaggt 2587715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 22411771 - 22411811
Alignment:
Q  31 tagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  22411771 tagctcagttggtatggacaatgcataatatatgtaaggtt 22411811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 34968045 - 34968017
Alignment:
Q  49 taatgcataatatatgtaaggtttgaggt 77  Q
    |||||||||||||||||||||||||||||    
T  34968045 taatgcataatatatgtaaggtttgaggt 34968017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 37462121 - 37462157
Alignment:
Q  34 cacagttggcatggataatgcataatatatgtaaggt 70  Q
    |||| |||||||||| |||||||||||||||||||||    
T  37462121 cacaattggcatggacaatgcataatatatgtaaggt 37462157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 38416063 - 38416128
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccac 97  Q
    ||||| ||||||| | ||||||||||||||||||| ||||| ||||  |||| ||||||| |||||||    
T  38416063 ttagctcagttggtaaggataatgcataatatatgcaaggtatgag--gttcgaatcccaaacaccac 38416128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 38453271 - 38453311
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||||||||||||| ||||||||||||||| |||||    
T  38453271 ttagctcagttggcatggacaatgcataatatatgcaaggt 38453311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 43722767 - 43722811
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||| | ||||||| ||||| |||||||||||||||||||||    
T  43722767 gagtttaactcagttggtatggacaatgcataatatatgtaaggt 43722811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 53190301 - 53190341
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  53190301 ttagctcagttggtatggataatgcataatatatgcaaggt 53190341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11017152 - 11017361
Alignment:
Q  1 atctcttatttattaattatcc-cgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccn 99  Q
    |||||||||||||||| ||||| || ||||||||| ||||||| | ||||||||||||||||||| ||||| ||||||  || |||||| |||||| ||     
T  11017152 atctcttatttattaagtatccgcgtgagtttagctcagttggtagggataatgcataatatatgcaaggtctgaggt--tcgaatcccggacaccgcca 11017249  T
Q  100 nnnnnnntctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaa 199  Q
           |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11017250 aaaaaa-tctcttatttattaaactcgaggtaattttaaattgatactcttaatttgagtatttaggtaacaaatactagatgaaattttagagaaaaaa 11017348  T
Q  200 ttggaactttgat 212  Q
    |||| ||||||||    
T  11017349 ttgggactttgat 11017361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 221 - 367
Target Start/End: Original strand, 11017408 - 11017553
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||| ||||| |||||| ||||||||||||||||| | || ||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  11017408 ttgttggtggattac-atcatggctcatcaacaaattcttcatataactaccaacaaatataaccaccaagaacttctggattgtttgattatgtctttg 11017506  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaagttatgat 367  Q
    || |||||||||||| ||||||| |||||||||||||||||||||||    
T  11017507 gaagaagtggaaataacaatgatgaaggtgatagtggaagttatgat 11017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 2642846 - 2642640
Alignment:
Q  3 ctcttatttattaattatc-ccgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccnnn 101  Q
    |||||||||||||| |||| ||| ||||||| |  |||||| | ||||||||||||||||||| || ||    || |||||||||||  || |||||       
T  2642846 ctcttatttattaagtatctccgtgagtttaacttagttggtagggataatgcataatatatgcaatgt----ggggttcaaatcccgaacgccaccaaa 2642751  T
Q  102 nnnnntctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaatt 201  Q
         ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  2642750 aaaaatctcttatttattaagttcaaggaaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagaaaaaatt 2642651  T
Q  202 ggaactttgat 212  Q
     | ||||||||    
T  2642650 aggactttgat 2642640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 2315655 - 2315518
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||||| |||| ||||| |||||| | |||||||| |||| ||||||||||||||||    
T  2315655 ttgttggtgaattaccaccatgactcatcaacaaattcttcatatgactaccaa-aaatagaaccaccaagaagttctagattatttgattatgtctttg 2315557  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||| ||||||||||| ||||||| ||| |||||||||||    
T  2315556 gagaaagtggaaataacaatgatgaagatgatagtggaa 2315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 2642600 - 2642463
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||| |||||| || |||||||||||||||||||||| | |||||| |||| ||||| |||||| | ||||||||||||| ||||||||||||||||    
T  2642600 ttgttggcgaattatcaccatgactcatcaacaaattcttcatatgactaccaa-aaatagaaccaccaagaagttctggattatttgattatgtctttg 2642502  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    |||||| |||||||| ||||||| ||| |||||||||||    
T  2642501 gaggaattggaaataacaatgatgaagatgatagtggaa 2642463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 2315798 - 2315695
Alignment:
Q  111 ttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaatttt--agagaaaaaattggaactt 208  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||||||||||||| ||||    
T  2315798 ttatttattaagttcaatgtaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagagaaaaaattgggactt 2315699  T
Q  209 tgat 212  Q
    ||||    
T  2315698 tgat 2315695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 14434682 - 14434629
Alignment:
Q  148 cttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattg 202  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  14434682 cttaatttgagtatt-aggtaacaaatattagatgaaattttagaggaaaaattg 14434629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 42193885 - 42193992
Alignment:
Q  247 atcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttggaggaagtgg-aaatagcaatgataa 345  Q
    |||||||||||||| | |||||| |||||||||| |||||| |  ||||| |||| || ||||||||||  ||||||||||||| ||||| ||||||| |    
T  42193885 atcaacaaattcttcaaatgactaccaacaaatagaaccaccaataagttatggagtgattgattatgtgattggaggaagtggaaaataacaatgatga 42193984  T
Q  346 aggtgata 353  Q
    | ||||||    
T  42193985 aagtgata 42193992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 39143718 - 39143767
Alignment:
Q  28 gtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    ||||||| ||||||| ||||| | ||||||||||||||||||||||||||    
T  39143718 gtttagctcagttggtatggacattgcataatatatgtaaggtttgaggt 39143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 3052203 - 3052252
Alignment:
Q  46 ggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccac 97  Q
    |||||||||||||||||||||||||||  || ||||||||||||| ||||||    
T  3052203 ggataatgcataatatatgtaaggttt--ggggttcaaatcccagccaccac 3052252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 19068494 - 19068453
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||    
T  19068494 ttagctcagttggtatggataatgcataatatatgcaaggtt 19068453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 6624782 - 6624822
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||||||||||||| ||||||||||||||| |||||    
T  6624782 ttagctcagttggcatggacaatgcataatatatgcaaggt 6624822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 14434725 - 14434689
Alignment:
Q  118 ttaaattcaaggtaattttaaattgacactcttaatt 154  Q
    |||| |||||| |||||||||||||||||||||||||    
T  14434725 ttaagttcaagctaattttaaattgacactcttaatt 14434689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 21657433 - 21657388
Alignment:
Q  50 aatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccac 97  Q
    ||||||||||||||||||||||||||  ||||||| | ||||||||||    
T  21657433 aatgcataatatatgtaaggtttgag--gttcaaacctcagacaccac 21657388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 26409259 - 26409299
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||||||| ||||| |||||||||||||||||||||    
T  26409259 ttagctcagttggtatggacaatgcataatatatgtaaggt 26409299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 42854360 - 42854328
Alignment:
Q  45 tggataatgcataatatatgtaaggtttgaggt 77  Q
    |||| ||||||||||||||||||||||||||||    
T  42854360 tggacaatgcataatatatgtaaggtttgaggt 42854328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 37921079 - 37920873
Alignment:
Q  5 cttatttattaattatcc-cgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccnnnnn 103  Q
    |||||||||||| ||||| || ||||||||| ||||||  | ||||||||||||||||||| || || || |||  ||||||||| ||||||||          
T  37921079 cttatttattaagtatcctcgtgagtttagctcagttgatagggataatgcataatatatgcaatgtctgcggt--tcaaatcccggacaccacaaaaaa 37920982  T
Q  104 nnntctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattgg 203  Q
       ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  37920981 aaatctcttatttattgagttcaaggtaattttaagttgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagaaaaaattgg 37920882  T
Q  204 aactttgat 212  Q
    |||||||||    
T  37920881 aactttgat 37920873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 35126350 - 35126146
Alignment:
Q  5 cttatttattaattatc-ccgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccnnnnn 103  Q
    |||||||||||| |||| ||| ||||||| | ||||||| | ||||||||||||||||||| ||| | || |||  ||||||||| |||| |||          
T  35126350 cttatttattaagtatctccgtgagtttaactcagttggtagggataatgcataatatatgcaagatctggggt--tcaaatcccggacatcac--aaaa 35126255  T
Q  104 nnntctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattgg 203  Q
       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  35126254 aaatctcttatttattaagttcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaactttagagaaaaaattgg 35126155  T
Q  204 aactttgat 212  Q
     ||||||||    
T  35126154 gactttgat 35126146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 221 - 359
Target Start/End: Original strand, 36432035 - 36432172
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||||| |||| ||||| |||||| | ||||||||||||| ||||||||||||||||    
T  36432035 ttgttggtgaattaccaccatgactcatcaacaaattcttcatatgactaccaa-aaatagaaccaccaagaagttctggattatttgattatgtctttg 36432133  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  36432134 gaggaagtggaaataacaatgatgaaggtgatagtggaa 36432172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 36431790 - 36431995
Alignment:
Q  5 cttatttattaattatcccgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccnnnnnn 104  Q
    ||||||||||||  |||||  ||||||||| ||||||| | |||||||| |||||||||| || || || |||  |||||||||||||| |||           
T  36431790 cttatttattaagcatcccttgagtttagctcagttggtagggataatgtataatatatgcaatgtctggggt--tcaaatcccagacaacacaaaaaaa 36431887  T
Q  105 nntctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattgga 204  Q
      ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| |||||||||||||||||     
T  36431888 aatcttttatttattaagttcaaggtaattttaaattgacactcttaaattgagtatataggtaagaaatactagatgaaactttagagaaaaaattggg 36431987  T
Q  205 actttgat 212  Q
    ||||||||    
T  36431988 actttgat 36431995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 35126106 - 35125969
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||| | |||||||||||||||||||||| | |||||| |||| ||||| |||||| | |||||| |||||| ||||||||||||||||    
T  35126106 ttgttggtgaattactaccatgactcatcaacaaattcttcatatgactaccaa-aaatagaaccaccaagaagttatggattatttgattatgtctttg 35126008  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  35126007 gaggaagtggaaataacaatgatgaaggtgatagtggaa 35125969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 37920833 - 37920696
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||||| |||| ||||| |||||| | ||||||||||||| ||||||||||||||||    
T  37920833 ttgttggtgaattaccaccatgactcatcaacaaattcttcatatgactaccaa-aaatagaaccaccaagaagttctggattatttgattatgtctttg 37920735  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||| ||||||||||| ||||||| || ||||||||||||    
T  37920734 gagcaagtggaaataacaatgatgaaagtgatagtggaa 37920696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 9308696 - 9308633
Alignment:
Q  149 ttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattggaactttgat 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9308696 ttaaattgagtatttaggtaacaaatattagatgaaattttagagaaaaaattgggactttgat 9308633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 42269300 - 42269345
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||||||| ||||| | ||||| ||||||||||||||||||||||    
T  42269300 gagtttagctcagttagtatggacaatgcataatatatgtaaggtt 42269345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 52508276 - 52508312
Alignment:
Q  36 cagttggcatggataatgcataatatatgtaaggttt 72  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  52508276 cagttggcatggacaatgcataatatatgcaaggttt 52508312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 221 - 367
Target Start/End: Complemental strand, 7838945 - 7838799
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||| |||||| | |||||| |||||||||||||||||||||||    
T  7838945 ttgttggtgaattaccaccatgactcattaacaaattcttcatatgactaccaacaaatagaaccaccaagaagttttggattgtttgattatgtctttg 7838846  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaagttatgat 367  Q
    |||||||||||||||  |||||| ||||||||| ||||||| |||||    
T  7838845 gaggaagtggaaataagaatgatgaaggtgatactggaagtcatgat 7838799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 989636 - 989452
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccnnnnnnnntctcttatttattaaattc 125  Q
    ||||||| | ||||||| | ||||||||| ||||||||| || || | ||| |||||||| || |||||||||        ||||||| ||||||| |||    
T  989636 gagtttaactcagttggtagggataatgcctaatatatgcaatgtct-agg-gttcaaattccggacaccaccaaaaaaaatctcttagttattaagttc 989539  T
Q  126 aaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattggaactttgat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||| ||||||||    
T  989538 aaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatactggatgaaactttagagcaaaaattgggactttgat 989452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 7839098 - 7838992
Alignment:
Q  107 tctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaa-aaaattggaa 205  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |    
T  7839098 tctcttatttattaagttcaaggtaattttaaattaacactcttaatttgagtatttaggtaacaaaaactagatgaaattttagagaaaaaaattggga 7838999  T
Q  206 ctttgat 212  Q
    |||||||    
T  7838998 ctttgat 7838992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 989412 - 989275
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| |||||||||||||||||||||  | |||||| |||| ||||| |||||| | ||||||||||||| ||||||| ||||||||    
T  989412 ttgttggtgaattaccaccatgactcatcaacaaattctccatatgactaccaa-aaatagaaccaccaagaagttctggattatttgattgtgtctttg 989314  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaa 359  Q
    ||| | ||||||||| ||||||| |||||||||||||||    
T  989313 gagcaggtggaaatatcaatgatgaaggtgatagtggaa 989275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 13958883 - 13958965
Alignment:
Q  130 taattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattggaactttgat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  13958883 taattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaaattttagagaaaaaattgggactttgat 13958965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 33881195 - 33881241
Alignment:
Q  149 ttaatttgagtatttaggtaacaaatattagatgaaattttagagaa 195  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  33881195 ttaatttgagtatttagataacaaatattagatgaaattttagagaa 33881241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13958788 - 13958860
Alignment:
Q  1 atctcttatttattaattatcccgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttg 73  Q
    |||||||||||||||| ||| | | ||||||||| |||||||||   ||||||||||||||||||||||||||    
T  13958788 atctcttatttattaagtattcagggagtttagctcagttggcagatataatgcataatatatgtaaggtttg 13958860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 1230723 - 1230669
Alignment:
Q  23 cgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    |||||||||| | ||||||| | | | ||||||||||||||||||||||||||||    
T  1230723 cgcgagtttaactcagttggtaggaacaatgcataatatatgtaaggtttgaggt 1230669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 37938497 - 37938535
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatg 64  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  37938497 gagtttagctcagttggtatggataatgcataatatatg 37938535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 41625190 - 41625240
Alignment:
Q  20 tcccgcgagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||| ||||| ||||||| ||| |||||||||||||||||||||||    
T  41625190 tcccgtgagcttagctcagttggtatgaataatgcataatatatgtaaggt 41625240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 42576024 - 42575970
Alignment:
Q  23 cgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    |||||||||| | |||| || ||||||||||||||||||||| || |||||||||    
T  42576024 cgcgagtttaactcagtcggtatggataatgcataatatatgcaatgtttgaggt 42575970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 8717534 - 8717489
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  8717534 gagtttagctcagttggtatggacaatgcataatatatgcaaggtt 8717489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 6235610 - 6235566
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||||| ||||||| |||||  ||||||||||||||||||||    
T  6235610 gagtttagctcagttggtatggacgatgcataatatatgtaaggt 6235566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 10320493 - 10320549
Alignment:
Q  21 cccgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    |||| ||||||||| ||||||  | | ||||||||||||||||||||||| ||||||    
T  10320493 cccgtgagtttagctcagttgataagaataatgcataatatatgtaaggtatgaggt 10320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 33451404 - 33451364
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  33451404 ttagctcagttggtatggataatgcataatatatgcaaggt 33451364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 221 - 367
Target Start/End: Complemental strand, 30639251 - 30639105
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgattatgtctttg 320  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||||| | |||||||| |||||| | |||||| |||||||||||||||||||||||    
T  30639251 ttgttggtgaattaccaccatgactcatcaacaaattcttcatatgactactaacaaatagaaccaccaagaagttttggattgtttgattatgtctttg 30639152  T
Q  321 gaggaagtggaaatagcaatgataaaggtgatagtggaagttatgat 367  Q
    || ||||||||||||  |||||| |||||| ||||||||||||||||    
T  30639151 gatgaagtggaaataataatgatgaaggtggtagtggaagttatgat 30639105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30639511 - 30639298
Alignment:
Q  1 atctcttatttattaattat-cccgcgagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccaccn 99  Q
    |||||||||||||||| ||| |||| ||||||||| ||||||| | | ||||||||||||||||| ||||| ||||||  || |||| | |||||||       
T  30639511 atctcttatttattaagtattcccgtgagtttagctcagttggtaggaataatgcataatatatgcaaggtctgaggt--tcgaatctcggacaccataa 30639414  T
Q  100 nnnnnnn---tctcttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaa 196  Q
              ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  30639413 aaaaaaaaaatctcttatttattaagttcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatactagatgaagttttagagaaa 30639314  T
Q  197 aaattggaactttgat 212  Q
    || |||| ||||||||    
T  30639313 aagttgggactttgat 30639298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 11985 - 11884
Alignment:
Q  111 ttatttattaaattcaaggtaattttaaattgacactcttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaaattggaactttg 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| | ||||    
T  11985 ttatttattaagttcaaggtaattttaaattgacactcttaatttgagtatttaggtaacagatactagatgaaagtttagagaaaaaattgggattttg 11886  T
Q  211 at 212  Q
    ||    
T  11885 at 11884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 3185616 - 3185566
Alignment:
Q  148 cttaatttgagtatttaggtaacaaatattagatgaaattttagagaaaaa 198  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3185616 cttaatttgagtatttagataacaaatattagatgaaattttagagaaaaa 3185566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 9174 - 9086
Alignment:
Q  221 ttgttggtgaattaccatcatgactcatcaacaaattctttacatgactgccaacaaatataaccacgaggaagttctggattgtttgat 310  Q
    |||||||||||||||   |||| ||||||||||||||||| | |||||| |||| ||||| |||||| | |||||||| |||| ||||||    
T  9174 ttgttggtgaattactcccatgtctcatcaacaaattcttcatatgactaccaa-aaatagaaccaccaagaagttctagattatttgat 9086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 24248161 - 24248211
Alignment:
Q  20 tcccgcgagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||| ||||||||||||| | ||||||| |||||||||||||||||    
T  24248161 tcccgtgagcttagcacagttggtaaggataatacataatatatgtaaggt 24248211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 35110077 - 35110107
Alignment:
Q  47 gataatgcataatatatgtaaggtttgaggt 77  Q
    |||||||||||||||||||||||||||||||    
T  35110077 gataatgcataatatatgtaaggtttgaggt 35110107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 10018402 - 10018446
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||    
T  10018402 gagtttagctcagttggta-ggataatgcataatatatgtaaggtt 10018446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 24623376 - 24623331
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    ||||||||| ||||||  ||||| ||||||||||||||||||||||    
T  24623376 gagtttagctcagttgatatggacaatgcataatatatgtaaggtt 24623331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 3185651 - 3185623
Alignment:
Q  126 aaggtaattttaaattgacactcttaatt 154  Q
    |||||||||||||||||||||||||||||    
T  3185651 aaggtaattttaaattgacactcttaatt 3185623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 11456434 - 11456390
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    |||||||  |||||||| ||||| |||||||||||||||||||||    
T  11456434 gagtttaaaacagttggtatggacaatgcataatatatgtaaggt 11456390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 34828308 - 34828360
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataat-atatgtaaggtttgaggt 77  Q
    ||||||||| ||||||| ||||| |||||||||| ||||||||||| ||||||    
T  34828308 gagtttagctcagttggtatggacaatgcataataatatgtaaggtctgaggt 34828360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 21164807 - 21164766
Alignment:
Q  36 cagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  21164807 cagttggtatggataatgcataatatatataaggtttgaggt 21164766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 44558833 - 44558782
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggt 77  Q
    ||||||||| ||||||| ||||| ||||||||||||||| ||||| ||||||    
T  44558833 gagtttagctcagttggtatggacaatgcataatatatgcaaggtctgaggt 44558782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 7946813 - 7946850
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatat 63  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7946813 gagtttagctcagttggcatggataatgtataatatat 7946850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 37451301 - 37451252
Alignment:
Q  21 cccgcgagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    |||| ||||||||| ||||||  | |||||||||||||||||||||||||    
T  37451301 cccgtgagtttagctcagttgataaggataatgcataatatatgtaaggt 37451252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 20205825 - 20205865
Alignment:
Q  27 agtttagcacagttggcatggataatgcataatatatgtaa 67  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  20205825 agtttagctcagttggtatggacaatgcataatatatgtaa 20205865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 24656976 - 24657016
Alignment:
Q  30 ttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  24656976 ttagctcagttggtatggataatgcataaaatatgtaaggt 24657016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 34897531 - 34897563
Alignment:
Q  45 tggataatgcataatatatgtaaggtttgaggt 77  Q
    |||| ||||||||||||||||||||||||||||    
T  34897531 tggacaatgcataatatatgtaaggtttgaggt 34897563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 41939156 - 41939118
Alignment:
Q  37 agttggcatggataatgcataatatatgtaaggtttgag 75  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  41939156 agttggtagggataatgcataatatatgtaaggtttgag 41939118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 28202409 - 28202453
Alignment:
Q  27 agtttagcacagttggcatggataatgcataatatatgtaaggtt 71  Q
    |||||||| || |||| ||||| ||||||||||||||||||||||    
T  28202409 agtttagctcaattggtatggacaatgcataatatatgtaaggtt 28202453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 30978364 - 30978408
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||||| || |||| ||||||||||||||||||||| |||||    
T  30978364 gagtttagctcaattggtatggataatgcataatatatgcaaggt 30978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 30248066 - 30248104
Alignment:
Q  36 cagttggcatggataatgcataatatatgtaaggtttga 74  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  30248066 cagttggcagggataatgcataatatatgtaagatttga 30248104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 19396250 - 19396202
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtttga 74  Q
    ||||||| | ||||||| | ||||||||||||||||||| |||||||||    
T  19396250 gagtttaactcagttggtagggataatgcataatatatgcaaggtttga 19396202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 34521249 - 34521205
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||||| ||||||| ||||| ||||||||||||||| |||||    
T  34521249 gagtttagctcagttggtatggacaatgcataatatatgcaaggt 34521205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 43611426 - 43611470
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  43611426 gagtttagctcagttggtatggacaatacataatatatgtaaggt 43611470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 48131287 - 48131243
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggt 70  Q
    ||||||| | |||||||||  ||||||||||||||||||||||||    
T  48131287 gagtttaactcagttggcagagataatgcataatatatgtaaggt 48131243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 31216 - 31176
Alignment:
Q  24 gcgagtttagcacagttggcatggataatgcataatatatg 64  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  31216 gcgagtttagctcagttggtatggacaatgcataatatatg 31176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 17506 - 17575
Alignment:
Q  26 gagtttagcacagttggcatggataatgcataatatatgtaaggtttgaggtgttcaaatcccagacaccac 97  Q
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T  17506 gagtttagctcagctgacatggacaatgcataatatatgcaaggttt--ggggttcgaatcccggacaccac 17575  T

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