View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15829_high_2 (Length: 474)

Name: NF15829_high_2
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15829_high_2
NF15829_high_2
[»] chr4 (2 HSPs)
chr4 (9-474)||(47213364-47213829)
chr4 (305-382)||(46899887-46899964)
[»] chr7 (5 HSPs)
chr7 (320-382)||(24673342-24673404)
chr7 (296-358)||(34925273-34925335)
chr7 (295-347)||(24375760-24375811)
chr7 (300-348)||(28726959-28727007)
chr7 (313-382)||(18749173-18749242)
[»] chr3 (1 HSPs)
chr3 (321-382)||(36060350-36060411)
[»] chr1 (1 HSPs)
chr1 (323-376)||(23312914-23312967)
[»] scaffold0223 (1 HSPs)
scaffold0223 (321-379)||(10599-10657)
[»] chr8 (2 HSPs)
chr8 (327-364)||(8683660-8683697)
chr8 (296-377)||(18899920-18900003)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 474
Target Start/End: Complemental strand, 47213829 - 47213364
Alignment:
Q  9 gagatgaaagagaggccaagcggtgcttatggcatgacagttgcagctgttgtaatatgtggtttagcagatggcttggttggtggaagtttgataggat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47213829 gagatgaaagagaggccaagcggtgcttatggcatgacagttgcagctgttgtaatatgtggtttagcagatggcttggttggtggaagtttgataggat 47213730  T
Q  109 cagcaggaaggcttccaaaacagtatatgcaagctgtttttgctggaactgcttcctcaggtaaaattacaagacaattattatatatgttccctcatag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47213729 cagcaggaaggcttccaaaacagtatatgcaagctgtttttgctggaactgcttcctcaggtaaaattacaagacaattattatatatgttccctcatag 47213630  T
Q  209 ttgatcaattttactttcctttttacattactattgacaacaatgtcgttaggtaggagctataacgcgatatagcgcctagttagcaatgttgttaaat 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47213629 ttgatcaattttactttcctttttacattactatcgacaacaatgtcgttaggtaggagctataacgcgatatagcgcctagttagaaatgttgttaaat 47213530  T
Q  309 agcggctatggcactgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaacactgatacaagagacagatcttgttttcct 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47213529 agcggctatggcactgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaacactgatacaagagacagatcttgttttcct 47213430  T
Q  409 tattcgaacaaattctaaggaatatnnnnnnnnctttgccttagatgaagcatacatgaaataaat 474  Q
    ||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||    
T  47213429 tattcgaacaaattctatggaatataaaaaaaactttgccttagatgaagcatacatgaaataaat 47213364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 46899964 - 46899887
Alignment:
Q  305 aaatagcggctatggcactgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaacactg 382  Q
    ||||||| |||||  ||||||||||||    ||||||||||||   |||||||||||||| | |||||||||||||||    
T  46899964 aaatagcagctataacactgttgcatagggaaatttgaacaaagcacaattttctgtgatccacaattgacaacactg 46899887  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 24673404 - 24673342
Alignment:
Q  320 cactgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaacactg 382  Q
    |||||||||||| | ||||||||||||||  | |||||||||||| ||||||| |||||||||    
T  24673404 cactgttgcatagctgaatttgaacaaaccactattttctgtgatccgcaattaacaacactg 24673342  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 34925335 - 34925273
Alignment:
Q  296 aatgttgttaaatagcggctatggcactgttgcataacagaatttgaacaaacttcaattttc 358  Q
    |||||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||| | ||||||    
T  34925335 aatgttgtcaaatagcggctatagcattgtagcatagcagaatttgaacaaactgctattttc 34925273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 24375760 - 24375811
Alignment:
Q  295 caatgttgttaaatagcggctatggcactgttgcataacagaatttgaacaaa 347  Q
    |||||||||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  24375760 caatgttgttaa-tagcggctatagcactattgcatagcagaatttgaacaaa 24375811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 28726959 - 28727007
Alignment:
Q  300 ttgttaaatagcggctatggcactgttgcataacagaatttgaacaaac 348  Q
    |||| |||||| |||||||||||||||||||| | ||||||||||||||    
T  28726959 ttgtgaaatagtggctatggcactgttgcatagcggaatttgaacaaac 28727007  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 18749242 - 18749173
Alignment:
Q  313 gctatggcactgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaacactg 382  Q
    ||||| |||||||||  ||||| |||||||||||||| | ||||| |||| |||||  ||||||||||||    
T  18749242 gctatagcactgttgtgtaacataatttgaacaaactgctattttttgtggttcgcgtttgacaacactg 18749173  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 36060350 - 36060411
Alignment:
Q  321 actgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaacactg 382  Q
    ||||||||||| || |||||||||||||  | |||||| | |||||||||||||||||||||    
T  36060350 actgttgcatagcaaaatttgaacaaaccactattttccgggattcgcaattgacaacactg 36060411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 23312967 - 23312914
Alignment:
Q  323 tgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgaca 376  Q
    ||||||| | ||||||||||||||||||| ||||| |||||||| |||||||||    
T  23312967 tgttgcacaccagaatttgaacaaacttctattttgtgtgattcacaattgaca 23312914  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 10657 - 10599
Alignment:
Q  321 actgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaaca 379  Q
    ||||||||||| ||||||||||||||||  | |||||||| ||||| ||||||| ||||    
T  10657 actgttgcatagcagaatttgaacaaaccgctattttctgcgattcacaattgataaca 10599  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 8683660 - 8683697
Alignment:
Q  327 gcataacagaatttgaacaaacttcaattttctgtgat 364  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  8683660 gcatagcagaatttgaacaaactacaattttctgtgat 8683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 18900003 - 18899920
Alignment:
Q  296 aatgttgttaaatagcggc--tatggcactgttgcataacagaatttgaacaaacttcaattttctgtgattcgcaattgacaa 377  Q
    |||||||| |||||| |||  ||| |||||||||  || | ||||||||||||||| | |||||||| |||| |||||||||||    
T  18900003 aatgttgtcaaatagaggcaatatagcactgttgtgtagcggaatttgaacaaactactattttctgcgatttgcaattgacaa 18899920  T

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