View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15829_high_5 (Length: 354)
Name: NF15829_high_5
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 1978681 - 1978994
Alignment:
| Q |
18 |
agctttggcacattgaaaatggttacagataatttaccatcttcctcttcaaattcttcttcaagggtttttcgaatatgaatcacccattgaagttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1978681 |
agctttggcacattgaaaatggttacagataatttaccatcttcctcttcaaattcttcttcaaggatttttcgaatatgaatcacccattgaagttcat |
1978780 |
T |
|
| Q |
118 |
caaaggttgatttaga---gtatgacatagtggaccttagagaagacatannnnnnnataactcttacaccgaagaaattatattggcaattttgatgaa |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
1978781 |
caaaggttgatttagaattatatgacatagtggaccttagagaagacata-ttttttataactcttacaccgaagaaattatattggcaat--------a |
1978871 |
T |
|
| Q |
215 |
agatgtatgttttgttcggtacttataatatgcacaattgcactagttatgactttgatagatcaatttacaataaacaattaggaatgtgttactcatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1978872 |
agatgtatgttttgttcggtacttataatatgcacaattgcacta------actttgatagatcaatttacaataaacaattaggaatgtgttactcatg |
1978965 |
T |
|
| Q |
315 |
gttatttcttttagggcatggaggttcat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1978966 |
gttatttcttttagggcatggaggttcat |
1978994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 1947725 - 1947409
Alignment:
| Q |
18 |
agctttggcacattgaaaatggttacagataatttaccatcttcctcttcaaattcttcttcaagggtttttcgaatatgaatcacccattgaagttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
1947725 |
agctttggcacattgaaaatggttacagataattcaccatcctcctcttcaaattcttcttcaagggtttttctaacatgaatcacccatcgaagttcat |
1947626 |
T |
|
| Q |
118 |
caaaggttgatttagagt---atgacatagtggaccttagagaagacatannnnnnn--ataactcttacaccgaagaaattatattggcaattttgatg |
212 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
1947625 |
caaaggttgatttagaattatatgacatagtggaccttagagaagacatttttttttttataactcttacactgaagaatttatattggcaattttgatg |
1947526 |
T |
|
| Q |
213 |
aaagatgtatgttttgttcggtacttataatatgcacaattgcactagttatgactttgatagatcaatttacaataaacaattaggaatgtgttactca |
312 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1947525 |
aaagatgtatggtttgttcgttacttataacttgcacaattgcactagctatgactttgttagatcaatttacaataaacaattaggaatgtgttactca |
1947426 |
T |
|
| Q |
313 |
tggttatttcttttagg |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1947425 |
tggttatttcttttagg |
1947409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 1985596 - 1985744
Alignment:
| Q |
18 |
agctttggcacattgaaaatggttacagataatttaccatcttcctcttcaaattcttcttcaagggtttttcgaatatgaatcacccattgaagttcat |
117 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||| ||||| |||||| ||||| |||||||| |||||||| |||| ||||||||||| || |||| |
|
|
| T |
1985596 |
agctttggcacattgaaaatggatatagacaattcaccattttcctcctcaaactcttcttctagggttttccgaacttgaatcacccaaagattctcat |
1985695 |
T |
|
| Q |
118 |
caaaggttgatttaga---gtatgacatagtggaccttagagaagacat |
163 |
Q |
| |
|
||||||||| ||| || |||||||| || || |||||||||||||| |
|
|
| T |
1985696 |
caaaggttgttttggaattatatgacatggtagatcttagagaagacat |
1985744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University