View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15829_high_6 (Length: 352)
Name: NF15829_high_6
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 74 - 339
Target Start/End: Complemental strand, 24835592 - 24835327
Alignment:
| Q |
74 |
ttgtgatacccagtcaatttcatacgagtgcaatagcggtggcacaaaaatttgacagtatatcccagtcatgctagataataaggtatgcactgaagta |
173 |
Q |
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| T |
24835592 |
ttgtgatacccagtcaatttcatacgagtgcaatagcggtggcacaaaaatttgacagtatatcccagtcatgctagataataaggtatgcactgaagta |
24835493 |
T |
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| Q |
174 |
gaaatcaagagagaccataatatttcaaagcatctgaaataggatgagtccaatgaggactggctgtgtatcaaacccaaaacattggaacagatcagtt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24835492 |
gaaatcaagagagaccataatatttcaaagcatctgaaataggatgagtccaatgaggactggctgtgtatcaaacccaaaacattggaacagatcagtt |
24835393 |
T |
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| Q |
274 |
gaattacgcactagcgtatatcctccaaattgcacgagtgtaagaatctacatcagattttaagaa |
339 |
Q |
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| T |
24835392 |
gaattacgcactagcgtatatcctccaaattgcacgagtgtaagaatctacatcagattttaagaa |
24835327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 113 - 335
Target Start/End: Original strand, 29809109 - 29809331
Alignment:
| Q |
113 |
tggcacaaaaatttgacagtatatcccagtcatgctagataataaggtatgcactgaagtagaaatcaagagagaccataatatttcaaagcatctgaaa |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||| | |||| |||| ||||||||| | |||||||||| ||| |||||| |||||| |
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| T |
29809109 |
tggcacaaaaatttgacagtatatctcagtcatgctatataataagatgtgcattgaaacagaaatcaaaatagaccataatttttaaaagcacctgaaa |
29809208 |
T |
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| Q |
213 |
taggatgagtccaatgaggactggctgtgtatcaaacccaaaacattggaacagatcagttgaattacgcactagcgtatatcctccaaattgcacgagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29809209 |
taggatgagtccaatgaggactggctgtgtatcaaacccaaaactttggaacagatcagttgaattacgcactagcgtatatcctccaaattgcaagagt |
29809308 |
T |
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| Q |
313 |
gtaagaatctacatcagatttta |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
29809309 |
gtaagaatctacatcagatttta |
29809331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 11027965 - 11027912
Alignment:
| Q |
216 |
gatgagtccaatgaggactggctgtgtatcaaacccaaaacattggaacagatc |
269 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||| ||| |||||||| |
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| T |
11027965 |
gatgagtccaatgatgactggctgtgaatgaaacccaaaactttgaaacagatc |
11027912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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