View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15829_high_8 (Length: 243)
Name: NF15829_high_8
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34573467 - 34573694
Alignment:
| Q |
1 |
aagcatttataattcatgccgggtagctcactagcttgagtgaatggattatatgcgatgatgagttaaaggtctaggg-tttgaatcttgacgacagag |
99 |
Q |
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| T |
34573467 |
aagcatttataattcatgccgggtagctcactagcttgagtgaatggattaaatgtgatgatgagttaaaggtctaggggtttgaatcttgacgacagag |
34573566 |
T |
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| Q |
100 |
aaaatactaacataaccattaaagtactgacatttattattcnnnnnnntactaacatttgtcattgaaaacaaaatcagcataatatcatatacaaaaa |
199 |
Q |
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| T |
34573567 |
aaaatactaacataaccattaaagtactgacatttattattcaaaaaaatactaacatttgtcattgaaaacaaaatcagcataatatcatatacaaaaa |
34573666 |
T |
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| Q |
200 |
catgatcatctaatacaaggaaacaaac |
227 |
Q |
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| T |
34573667 |
catgatcatctaatacaaggaaacaaac |
34573694 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 47774140 - 47774069
Alignment:
| Q |
63 |
gagttaaaggtctagggtttgaatcttgacgacagagaaaatactaacataaccattaaagtactgacattt |
134 |
Q |
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|||||||||||| |||||||||||| || | | ||||||||||||||||||| ||||| |||| |||||| |
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| T |
47774140 |
gagttaaaggtccagggtttgaatcctggcaagggagaaaatactaacataacaattaacatactaacattt |
47774069 |
T |
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