View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15829_high_9 (Length: 237)
Name: NF15829_high_9
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27714518 - 27714298
Alignment:
| Q |
1 |
gacagtcctcaaggcctcttttccttgttatgttttttaccttcaaggtaatcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaact |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27714518 |
gacagtcctctaggcctcttttccttgttatgttttttaccttcagggtaatcaaaaccttaagataccaccttaacgaaaaccctaaaaaacgcaaact |
27714419 |
T |
|
| Q |
101 |
tcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27714418 |
tcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactaggtggatacacaaaataatggaagaaaaa |
27714319 |
T |
|
| Q |
201 |
nncacagaaatagcatgtatc |
221 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27714318 |
aacacagaaatagcatgtatc |
27714298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 27747339 - 27747161
Alignment:
| Q |
17 |
tcttttccttgttatgttttttaccttcaaggtaatcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaa |
116 |
Q |
| |
|
|||| ||||| |||| ||||||| || | ||||||||||||| ||||||||||| || || |||||||||||| ||||||||| || ||||||||| |
|
|
| T |
27747339 |
tcttctccttattatattttttagttttatggtaatcaaaaccataagataccacttagttgagaaccctaaaaaagccaaacttccacccggtcccaaa |
27747240 |
T |
|
| Q |
117 |
ccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaag |
195 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||| || ||| | |||| |||||||||||| |||||||||| |
|
|
| T |
27747239 |
ccatggcctatcgttggtaatattcctgaaatgcttgcaaataaacctgctactaggtggatacacaagataatggaag |
27747161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 27697690 - 27697789
Alignment:
| Q |
96 |
aaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||| | |||||||| |
|
|
| T |
27697690 |
aaacttcccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgcttgcaaacaaacctgcaactagttggatacacaagaaaatggaag |
27697789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 27727705 - 27727573
Alignment:
| Q |
49 |
taatcaaaaccttaagataccacctaaacgaaaaccctaaaaaacgcaaacttcccccaggtcccaaaccatggcctatagttggcaatcttcctgaaat |
148 |
Q |
| |
|
|||||||| || ||||||||||| ||| | |||||||| |||| |||||||| |||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
27727705 |
taatcaaatccataagataccacttaattaagaaccctaacaaaccaaaacttccaccaggtcccaaaccatggcctatacttggtaacattcctgaaat |
27727606 |
T |
|
| Q |
149 |
gcttgcaaacaagcctacaactacgtggataca |
181 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||| |
|
|
| T |
27727605 |
gcttgcaaacaaacctgcaactaggtggataca |
27727573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 26408685 - 26408804
Alignment:
| Q |
102 |
cccccaggtcccaaaccatggcctatagttggcaatcttcctgaaatgcttgcaaacaagcctacaactacgtggatacacaaaataatggaagnnnnnn |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||| || ||| ||||||| |||| | ||||||| |
|
|
| T |
26408685 |
cccccaggtcccaaaccatggcctatagttggtaatcttcctgaaatgattgcaaataatcctgcacctatgtggatattcaaagtgatggaagatttga |
26408784 |
T |
|
| Q |
202 |
ncacagaaatagcatgtatc |
221 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
26408785 |
acaccgaaatagcatgtatc |
26408804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 32347607 - 32347570
Alignment:
| Q |
120 |
tggcctatagttggcaatcttcctgaaatgcttgcaaa |
157 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
32347607 |
tggcctatagtaggcaaccttcctgaaatgcttgcaaa |
32347570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 32364269 - 32364232
Alignment:
| Q |
120 |
tggcctatagttggcaatcttcctgaaatgcttgcaaa |
157 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
32364269 |
tggcctatagtaggcaaccttcctgaaatgcttgcaaa |
32364232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University