View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15829_low_2 (Length: 730)
Name: NF15829_low_2
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_low_2 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 730
Target Start/End: Complemental strand, 50555201 - 50554442
Alignment:
| Q |
1 |
tcattgtaagtcatgtcccagtttccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccatatgaggcactatttccctgctggacgt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
50555201 |
tcattgtaagtcatgtccaagtttccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccgtatgaggcactatttccctgctggaagt |
50555102 |
T |
|
| Q |
101 |
tgatggttggcgaaacatgtggcatgcggcgaatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
50555101 |
tgatggttggcgaaacatgtggcatgcggcgaat------------gttgagttgtggtggtgtgctcatttgacattgattatgaagaaattgattatt |
50555014 |
T |
|
| Q |
201 |
tagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcacctattataatagtatatgttagttaatttcttcaatcattgatatttat |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50555013 |
tagtgatgtggtgaaagagcttctagtgaccatatcctcagctaacttcacctattataatagtatatgttagttaatttcttcaatcagtgatatttat |
50554914 |
T |
|
| Q |
301 |
tttcgtatgcataatta-------agctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaa |
393 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50554913 |
tttcgtatgaataattatataataagctcactgtataccttagctctcaaagcttcaacatctgattttagcactcggttatttgtatcagcctcatgaa |
50554814 |
T |
|
| Q |
394 |
attgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatg |
493 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
50554813 |
attgttgactggtatcagtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagagatcaaaattcaaatgggaagaaaatgatg |
50554714 |
T |
|
| Q |
494 |
actacttatg-------------------ctcacaaaagattatgctccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttt |
574 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50554713 |
actacttatgctgtttagctgttatacatctcacaaaagattatgctccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttt |
50554614 |
T |
|
| Q |
575 |
tctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattattatatcataatttgaaaaccacatataataag |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50554613 |
tctccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattattatatcataatttgaaaaccaaatataataag |
50554514 |
T |
|
| Q |
675 |
----------------aagttagacggaaataccttctttggcgtttcatatcaactggatttgtaatttgt |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50554513 |
aaaagtgttgtatttaaagttagacggaaataccttctttggcgtttcatatcaactggatttgtaatttgt |
50554442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 316 - 503
Target Start/End: Complemental strand, 50817513 - 50817326
Alignment:
| Q |
316 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
415 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
50817513 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50817414 |
T |
|
| Q |
416 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
503 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
50817413 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50817326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 316 - 503
Target Start/End: Original strand, 50858351 - 50858538
Alignment:
| Q |
316 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
415 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
50858351 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50858450 |
T |
|
| Q |
416 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
503 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
50858451 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 50817758 - 50817528
Alignment:
| Q |
24 |
tccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccatatgaggcactatttccctgctggacgttgatggttggcgaaacatgtggc |
123 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||| || ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
50817758 |
tccaaacccaacaagatttaaattgtgttcgccaaccgtgactccattgtatcaggcactatttccctgctggacattgatggttggtgaaacatgtggc |
50817659 |
T |
|
| Q |
124 |
atgcggcgaatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttc |
223 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
|
|
| T |
50817658 |
atgcagcgaatactagtagtcgtgttgagttgtggcggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttc |
50817559 |
T |
|
| Q |
224 |
tagtgaccatatcctcagctaacttcaccta |
254 |
Q |
| |
|
||||||| |||| || ||||||||||||| |
|
|
| T |
50817558 |
tagtgactatatgcttgactaacttcaccta |
50817528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 50858106 - 50858336
Alignment:
| Q |
24 |
tccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccatatgaggcactatttccctgctggacgttgatggttggcgaaacatgtggc |
123 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||| || ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
50858106 |
tccaaacccaacaagatttaaattgtgttcgccaaccgtgactccattgtatcaggcactatttccctgctggacattgatggttggtgaaacatgtggc |
50858205 |
T |
|
| Q |
124 |
atgcggcgaatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttc |
223 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
|
|
| T |
50858206 |
atgcagcgaatactagtagtcgtgttgagttgtggcggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttc |
50858305 |
T |
|
| Q |
224 |
tagtgaccatatcctcagctaacttcaccta |
254 |
Q |
| |
|
||||||| |||| || ||||||||||||| |
|
|
| T |
50858306 |
tagtgactatatgcttgactaacttcaccta |
50858336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 521 - 642
Target Start/End: Complemental strand, 50817093 - 50816972
Alignment:
| Q |
521 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
620 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
|
|
| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50816994 |
T |
|
| Q |
621 |
aaaccatgtcatgaatcattat |
642 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50816993 |
aaaccatgtcatgaatcattat |
50816972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 521 - 642
Target Start/End: Original strand, 50858771 - 50858892
Alignment:
| Q |
521 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
620 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
|
|
| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50858870 |
T |
|
| Q |
621 |
aaaccatgtcatgaatcattat |
642 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50858871 |
aaaccatgtcatgaatcattat |
50858892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 327 - 459
Target Start/End: Original strand, 1130524 - 1130656
Alignment:
| Q |
327 |
tataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatata |
426 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||| || || | ||| || |||||||||| |||| ||| |||| ||| ||| ||| |
|
|
| T |
1130524 |
tataccttagctctcaaagcttcaacatcggattttagtactcggttgttagtgttagcatcgcgaaattgttggctggcatctgtaagctgcttaaata |
1130623 |
T |
|
| Q |
427 |
gtgttgcattttccagtttcagtttttcaacct |
459 |
Q |
| |
|
| ||||||||||||| ||| || |||||||| |
|
|
| T |
1130624 |
ggcttgcattttccagcctcaattgttcaacct |
1130656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University