View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15829_low_4 (Length: 466)
Name: NF15829_low_4
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_low_4 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 13212191 - 13212641
Alignment:
| Q |
1 |
agaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagatt |
100 |
Q |
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| T |
13212191 |
agaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagatt |
13212290 |
T |
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| Q |
101 |
ttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccatggttccc |
200 |
Q |
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| T |
13212291 |
ttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccatggttccc |
13212390 |
T |
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| Q |
201 |
ggtgaccctaaccctccatttcctggcacattcactggtgtttcttcatcttctaaaggtagcctttcataagcagcatttccaaaggaagctgccatga |
300 |
Q |
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| T |
13212391 |
ggtgaccctaaccctccatttcctggcacattcactggtgtttcttcatcttctaaaggtagcctttcataagcagcatttccaaaggaagctgccatga |
13212490 |
T |
|
| Q |
301 |
taacaaccggaccggaagctaacaacggtcccaccacgctaccaccgacgacctgtccttgtccaccagctagatatatggctaatcctgacgccgctgg |
400 |
Q |
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| T |
13212491 |
taacaaccggaccggaagctaacaacggtcccaccacgctaccaccgacgacctgtccttgtccaccagctagatatatggctaatcctgacgccgctgg |
13212590 |
T |
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| Q |
401 |
tggagcaggcggcggcaggaaagagccagataatgataatatctcaaatct |
451 |
Q |
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| T |
13212591 |
tggagcaggcggcggcaggaaagagccagataatgataatatctcaaatct |
13212641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
34 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
111 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||| ||| ||||||| |||||| |
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| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
34 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
111 |
Q |
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| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
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