View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15829_low_5 (Length: 386)

Name: NF15829_low_5
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15829_low_5
NF15829_low_5
[»] chr4 (9 HSPs)
chr4 (171-356)||(12448615-12448802)
chr4 (1-107)||(12448513-12448619)
chr4 (310-368)||(7949424-7949482)
chr4 (310-368)||(21375825-21375883)
chr4 (310-354)||(4249225-4249269)
chr4 (314-368)||(40283956-40284010)
chr4 (314-368)||(49938806-49938860)
chr4 (310-339)||(5795408-5795437)
chr4 (310-354)||(37109335-37109379)
[»] chr7 (9 HSPs)
chr7 (310-368)||(21558176-21558234)
chr7 (310-354)||(29385727-29385771)
chr7 (310-368)||(15137601-15137659)
chr7 (312-360)||(4566406-4566454)
chr7 (311-360)||(7721418-7721467)
chr7 (310-339)||(7744111-7744140)
chr7 (310-339)||(18363744-18363773)
chr7 (310-354)||(26459394-26459438)
chr7 (310-354)||(29785285-29785329)
[»] chr2 (6 HSPs)
chr2 (310-356)||(11251135-11251181)
chr2 (310-368)||(21195646-21195704)
chr2 (310-368)||(42327365-42327423)
chr2 (314-354)||(11062412-11062452)
chr2 (310-338)||(34041588-34041616)
chr2 (310-354)||(45026791-45026835)
[»] chr1 (6 HSPs)
chr1 (310-354)||(15786304-15786348)
chr1 (310-356)||(6650643-6650689)
chr1 (310-368)||(10526871-10526929)
chr1 (310-355)||(33700756-33700801)
chr1 (310-339)||(51281399-51281428)
chr1 (310-354)||(2799910-2799954)
[»] chr3 (10 HSPs)
chr3 (310-361)||(44069806-44069857)
chr3 (310-360)||(160336-160386)
chr3 (310-354)||(27093345-27093389)
chr3 (310-354)||(30311354-30311398)
chr3 (310-354)||(33899662-33899706)
chr3 (310-361)||(14186695-14186746)
chr3 (310-364)||(19154679-19154733)
chr3 (310-368)||(52769953-52770011)
chr3 (310-339)||(17108897-17108926)
chr3 (324-368)||(33278990-33279034)
[»] chr8 (12 HSPs)
chr8 (310-368)||(6536568-6536626)
chr8 (310-368)||(23361619-23361677)
chr8 (310-355)||(35690047-35690092)
chr8 (312-368)||(43594288-43594344)
chr8 (310-368)||(11928701-11928759)
chr8 (310-368)||(13129716-13129774)
chr8 (310-368)||(33727843-33727901)
chr8 (310-368)||(44780084-44780142)
chr8 (310-339)||(28787495-28787524)
chr8 (318-367)||(36034492-36034541)
chr8 (310-354)||(3174789-3174833)
chr8 (310-354)||(33017262-33017306)
[»] chr5 (7 HSPs)
chr5 (310-368)||(17028234-17028292)
chr5 (310-368)||(43442244-43442302)
chr5 (310-354)||(25627105-25627149)
chr5 (310-339)||(17155870-17155899)
chr5 (310-338)||(87423-87451)
chr5 (310-354)||(14285209-14285253)
chr5 (310-354)||(37258350-37258394)
[»] chr6 (4 HSPs)
chr6 (310-354)||(14278095-14278139)
chr6 (320-368)||(33456623-33456671)
chr6 (310-368)||(28363985-28364043)
chr6 (310-368)||(28841462-28841520)
[»] scaffold0101 (1 HSPs)
scaffold0101 (312-358)||(41732-41778)
[»] scaffold0238 (1 HSPs)
scaffold0238 (310-354)||(2695-2739)
[»] scaffold0180 (1 HSPs)
scaffold0180 (310-354)||(19946-19990)
[»] scaffold0115 (1 HSPs)
scaffold0115 (312-368)||(42634-42690)
[»] scaffold0006 (1 HSPs)
scaffold0006 (310-354)||(18347-18391)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 171 - 356
Target Start/End: Original strand, 12448615 - 12448802
Alignment:
Q  171 ttagttatttgttgaatctcatctatttacgtttatataaacta--gtctcacatgtgatgaaataattttgtaatacacaaagtgcaaaaccctattga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12448615 ttagttatttgttgaatctcatctatttacgtttatataaactatagtctcacatgtgatgaaataattttgtaatacacgaagtgcaaaaccctattga 12448714  T
Q  269 aatgaagaagagattaatgataataatatgagtagtgtttggctcctcctcaaggtctcaggtttgattctttttggtgtcaatttag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||    
T  12448715 aatgaagaagagattaatgataataatatgagtagtgtttggctcctcctcaagatctcaggttcgattctctttagtgccaatttag 12448802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 12448513 - 12448619
Alignment:
Q  1 gtcaagtttaggagttattgtttcaggacacatgttttggcaaggaaatttggacatttgtggcccttgttctggggtggaggtccatagtaagcacttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12448513 gtcaagtttaggagttattgttttaggacacatgttttggcaagaaaatttggacatttgtggcccttgttctggggtgaaggtccatagtaagcacttt 12448612  T
Q  101 gattagt 107  Q
    |||||||    
T  12448613 gattagt 12448619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 7949482 - 7949424
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||| |||| ||||||    
T  7949482 gctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaattt 7949424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 21375825 - 21375883
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||| |||||| || |||||||| | |||||||||| |||||||||||||    
T  21375825 gctcctcctcaagctctcagattcgattctttctagtgtcaatttggatgggttaattt 21375883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 4249225 - 4249269
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||    
T  4249225 gctcctcctcaaggtctcaggtttgattctctctggtgccaattt 4249269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 40284010 - 40283956
Alignment:
Q  314 ctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||| ||||||||||||  |||||| |||||||| |||| ||||||    
T  40284010 ctcctcaaggtctaaggtttgattctgcttggtgccaatttaggtgggctaattt 40283956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 49938860 - 49938806
Alignment:
Q  314 ctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||| |||||||||||||  | ||| |||||||| |||||||||||    
T  49938860 ctcctcaaggtcttaggtttgattcttcctagtgccaatttaggtgggttaattt 49938806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 5795437 - 5795408
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  5795437 gctcctcctcaaggtctcaggtttgattct 5795408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 37109379 - 37109335
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||    
T  37109379 gctcctcctcaaggtctcaggttcgattctctctggtgccaattt 37109335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 21558176 - 21558234
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||| | ||||| |||||||| |||||||||||    
T  21558176 gctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaattt 21558234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 29385771 - 29385727
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  29385771 gctcctcctcaaggtctcaggtttgattctctttggtgccaattt 29385727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 15137601 - 15137659
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||| | |||||||||||| | |||| ||||||    
T  15137601 gctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaattt 15137659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 4566454 - 4566406
Alignment:
Q  312 tcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgg 360  Q
    |||| ||||||||||||||||||||||| | ||||| ||||||||||||    
T  4566454 tccttctcaaggtctcaggtttgattctctctggtgccaatttagatgg 4566406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 7721418 - 7721467
Alignment:
Q  311 ctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgg 360  Q
    |||||||||||||||||| ||| |||||| | |||||||||||| |||||    
T  7721418 ctcctcctcaaggtctcatgttcgattctctctggtgtcaatttggatgg 7721467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 7744140 - 7744111
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  7744140 gctcctcctcaaggtctcaggtttgattct 7744111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 18363744 - 18363773
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  18363744 gctcctcctcaaggtctcaggtttgattct 18363773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 26459438 - 26459394
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||    
T  26459438 gctcctcctcaaggtctcaggttcgattctctctggtgccaattt 26459394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 29785329 - 29785285
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||| ||| |||||||| ||||| ||||||    
T  29785329 gctcctcctcaaggtctcatgttcgattctttctggtgccaattt 29785285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 11251135 - 11251181
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttag 356  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  11251135 gctcctcctcaaggtctcaggtttgattctctctggtgtcaatttag 11251181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 21195704 - 21195646
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||  | | |||||||||| |||||| ||||||    
T  21195704 gctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaattt 21195646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 42327423 - 42327365
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||| || |||| |||||| | |||| ||||||    
T  42327423 gctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaattt 42327365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 11062412 - 11062452
Alignment:
Q  314 ctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  11062412 ctcctcaaggtctcaggtttgattctctcttgtgtcaattt 11062452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 34041616 - 34041588
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattc 338  Q
    |||||||||||||||||||||||||||||    
T  34041616 gctcctcctcaaggtctcaggtttgattc 34041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 45026791 - 45026835
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||| |||||||||| | ||||| ||||||    
T  45026791 gctcctcctcaaggtctcatgtttgattctctctggtgccaattt 45026835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 15786348 - 15786304
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  15786348 gctcctcctcaaggtctcaggttcgattctctttggtgtcaattt 15786304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 6650643 - 6650689
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttag 356  Q
    |||||||||||| |||||||||| |||||| | ||||||||||||||    
T  6650643 gctcctcctcaatgtctcaggttcgattctctctggtgtcaatttag 6650689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 10526871 - 10526929
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||||||| || |||||| | ||| |||||||| | |||||||||||    
T  10526871 gctcctcctcaaggtctcagattcgattctctctggagtcaatttgggtgggttaattt 10526929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 33700801 - 33700756
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattta 355  Q
    ||||||||||||||||||||||| |||||| | ||||| |||||||    
T  33700801 gctcctcctcaaggtctcaggttcgattctctctggtgccaattta 33700756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 51281399 - 51281428
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  51281399 gctcctcctcaaggtctcaggtttgattct 51281428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 2799910 - 2799954
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||    
T  2799910 gctcctcctcaaggtctcaggttcgattctctctggtgccaattt 2799954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 44069806 - 44069857
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatggg 361  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||| ||||    
T  44069806 gctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtggg 44069857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 160386 - 160336
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgg 360  Q
    |||||||||||||||||||| || |||||||||| |||||| |||||||||    
T  160386 gctcctcctcaaggtctcagattcgattcttttttgtgtcagtttagatgg 160336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 27093389 - 27093345
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||    
T  27093389 gctcctcctcaaggtctcaggtttgattctctctggtgccaattt 27093345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 30311354 - 30311398
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||    
T  30311354 gctcctcctcaaggtctcaggttcgattctctttggtgccaattt 30311398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 33899662 - 33899706
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||    
T  33899662 gctcctcctctaggtctcaggttcgattctctttggtgtcaattt 33899706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 14186695 - 14186746
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatggg 361  Q
    ||||||||||||||||||||||| |||||| |  ||||||||||||| ||||    
T  14186695 gctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtggg 14186746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 19154679 - 19154733
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggtta 364  Q
    ||||||||| ||||||||||||| |||||| |||| ||||||||| | |||||||    
T  19154679 gctcctcctaaaggtctcaggttcgattctctttgatgtcaatttgggtgggtta 19154733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 52770011 - 52769953
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||  |||||||||||| |||||| ||| |||||||||||| |||| ||||||    
T  52770011 gctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaattt 52769953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 17108926 - 17108897
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  17108926 gctcctcctcaaggtctcaggtttgattct 17108897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 33279034 - 33278990
Alignment:
Q  324 tctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||    
T  33279034 tctcaggtttgattctctccggtgtcaatttagatgggataattt 33278990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 6536568 - 6536626
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||||||||||  ||||| | ||||| |||||||| |||||||||||    
T  6536568 gctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaattt 6536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 23361677 - 23361619
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||||||||||  ||||| | |||||||||||||| |||| ||||||    
T  23361677 gctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaattt 23361619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 35690092 - 35690047
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattta 355  Q
    ||||||||||||||||||||||| |||||| | |||||||||||||    
T  35690092 gctcctcctcaaggtctcaggttcgattctctctggtgtcaattta 35690047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 43594344 - 43594288
Alignment:
Q  312 tcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||| |||||| | | |||||||||| |||||| ||||||    
T  43594344 tcctcctcaaggtctcaggttcgattctctctagtgtcaatttggatgggctaattt 43594288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 11928759 - 11928701
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||| |||||||||||| |||||||   | ||||||||| |||||||||||||    
T  11928759 gctcctcctcgaggtctcaggttcgattcttaccgatgtcaatttggatgggttaattt 11928701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 13129716 - 13129774
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||| ||||||| |||||| | ||||| |||||| ||||| |||||||    
T  13129716 gctcctcctcaaggtttcaggttcgattctctctggtgccaatttggatggattaattt 13129774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 33727901 - 33727843
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||  | | |||||||||| |||||| ||||||    
T  33727901 gctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaattt 33727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 44780142 - 44780084
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||||||||||||||||  | | |||||||||| | |||| ||||||    
T  44780142 gctcctcctcaaggtctcaggtttgattccctctagtgtcaatttgggtgggctaattt 44780084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 28787524 - 28787495
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  28787524 gctcctcctcaaggtctcaggtttgattct 28787495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 36034541 - 36034492
Alignment:
Q  318 tcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaatt 367  Q
    ||||||||||| |||||||||| | |||||||||||||| |||| |||||    
T  36034541 tcaaggtctcaagtttgattctctctggtgtcaatttaggtgggctaatt 36034492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 3174833 - 3174789
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    |||| |||||||||||||||||| |||||| | ||||||||||||    
T  3174833 gctcatcctcaaggtctcaggttcgattctctctggtgtcaattt 3174789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 33017262 - 33017306
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||    
T  33017262 gctcctcctcaaggtctcaggttcgattctctctggtgccaattt 33017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 17028292 - 17028234
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||||||||||||||||  | | |||||||||||| |||| ||||||    
T  17028292 gctcctcctcaaggtctcaggtttgattccctctagtgtcaatttaggtgggctaattt 17028234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 43442244 - 43442302
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||||||| |||||| | || ||||||||| |||||| ||||||    
T  43442244 gctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaattt 43442302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 25627105 - 25627149
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||    
T  25627105 gctcctcctcaaggtctcaggttcgattctctctggtgtcaattt 25627149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 339
Target Start/End: Original strand, 17155870 - 17155899
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattct 339  Q
    ||||||||||||||||||||||||||||||    
T  17155870 gctcctcctcaaggtctcaggtttgattct 17155899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 87451 - 87423
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattc 338  Q
    |||||||||||||||||||||||||||||    
T  87451 gctcctcctcaaggtctcaggtttgattc 87423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 14285209 - 14285253
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||    
T  14285209 gctcctcctcaaggtctcaggttcgattctctctggtgccaattt 14285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 37258394 - 37258350
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||| ||||||| |||||| | ||||||||||||    
T  37258394 gctcctcctcaaggtttcaggttcgattctctctggtgtcaattt 37258350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 14278139 - 14278095
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||    
T  14278139 gctcctccttaaggtctcaggtttgattctctctggtgtcaattt 14278095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 33456671 - 33456623
Alignment:
Q  320 aaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  33456671 aaggtctcatgttcgattctttctggtgtcaatttaggtgggttaattt 33456623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 28363985 - 28364043
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    |||||||||||||||||||| || |||| | | |||||||||||| |||||| ||||||    
T  28363985 gctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaattt 28364043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 28841462 - 28841520
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||||||||||| ||| |||||| |  ||||||||||||||| || ||||||    
T  28841462 gctcctcctcaaggtctcaagttcgattctctccggtgtcaatttagattggctaattt 28841520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 41778 - 41732
Alignment:
Q  312 tcctcctcaaggtctcaggtttgattctttttggtgtcaatttagat 358  Q
    ||||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  41778 tcctcctcaagatctcaggtgtgattattttttgtgtcaatttagat 41732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 2739 - 2695
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||    
T  2739 gctcctcctcaaggtctcaggttcgattctctctggtgccaattt 2695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 19990 - 19946
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||||||||||| |||||| | |||||| |||||    
T  19990 gctcctcctcaaggtctcaggttcgattctctctggtgttaattt 19946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 42690 - 42634
Alignment:
Q  312 tcctcctcaaggtctcaggtttgattctttttggtgtcaatttagatgggttaattt 368  Q
    ||||||||||| ||||| ||| |||||| | |||||||||||||| |||| ||||||    
T  42690 tcctcctcaagatctcaagttcgattctctatggtgtcaatttaggtgggctaattt 42634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 18347 - 18391
Alignment:
Q  310 gctcctcctcaaggtctcaggtttgattctttttggtgtcaattt 354  Q
    ||||||||||||||| |||||||||||||| | ||||| ||||||    
T  18347 gctcctcctcaaggtttcaggtttgattctctctggtgccaattt 18391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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