View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15829_low_8 (Length: 345)
Name: NF15829_low_8
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 32805612 - 32805302
Alignment:
| Q |
20 |
atccgagtcttctattaaggagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagttggaaggatattttttgcc |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805612 |
atccgagtcttctattgaggagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagttggaaggatattttttgcc |
32805513 |
T |
|
| Q |
120 |
aacctccataagaaattttgtgcacttttagggacaggaatactccaaatacgcttccatatctcataattgttgctatttgaggattcagcctgctccg |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |
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| T |
32805512 |
aacctccataagaaattttgtgcacttttagggacgggaatgctccaaatacgcttccaaatctcagaattgttgctatttgaggattcagcctgctctg |
32805413 |
T |
|
| Q |
220 |
agtttctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805412 |
agtttctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacaga |
32805313 |
T |
|
| Q |
320 |
taaatggatgc |
330 |
Q |
| |
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|||| |||||| |
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| T |
32805312 |
taaagggatgc |
32805302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 330
Target Start/End: Original strand, 6095309 - 6095615
Alignment:
| Q |
24 |
gagtcttctattaaggagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagttggaaggatattttttgccaacc |
123 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6095309 |
gagtcttctattgagaagttacaaagaggacaactcatatccagggatatacctttcttacccaaattacttctagttggaaggatattttttgtcaacc |
6095408 |
T |
|
| Q |
124 |
tccataagaaattttgtgcacttttagggacaggaatactccaaatacgcttccatatctcataattgttgctatttgaggattcagcctgctccgagtt |
223 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6095409 |
tccataagaaattttgtgcacttttagggacgggagtactccaaatacgcttccatatctcagaattgttgctatttgaggattcagcctgctccgagtt |
6095508 |
T |
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| Q |
224 |
tctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6095509 |
tctatcctcacacattgcatgatgcgccgatctcacagagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaa |
6095608 |
T |
|
| Q |
324 |
tggatgc |
330 |
Q |
| |
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|||||| |
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|
| T |
6095609 |
gggatgc |
6095615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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