View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15829_low_9 (Length: 314)
Name: NF15829_low_9
Description: NF15829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15829_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 32148886 - 32148591
Alignment:
| Q |
3 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
102 |
Q |
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| T |
32148886 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
32148787 |
T |
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| Q |
103 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
202 |
Q |
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| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
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| Q |
203 |
acttcattacaatccttctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccggtcacaaaag |
298 |
Q |
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| T |
32148686 |
acttcattacaaccctcctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaag |
32148591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 103 - 298
Target Start/End: Complemental strand, 32139387 - 32139201
Alignment:
| Q |
103 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
202 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| ||| |||||||||||| | |||||| |||| |
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| T |
32139387 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactctagccatggctaattccaattttcaac |
32139297 |
T |
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| Q |
203 |
acttcattacaatccttctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccggtcacaaaag |
298 |
Q |
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| T |
32139296 |
acttcattacaatccttctcctatttttcttcatttcacccactttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaag |
32139201 |
T |
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