View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583-INSERTION-3 (Length: 293)
Name: NF1583-INSERTION-3
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583-INSERTION-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 41705703 - 41705989
Alignment:
| Q |
8 |
gtatctaaggctgcaactaactgtgtatgatgaaagataatgcagcaaaagaatgtttgagccaaatgacttgactataagaaaagaatgcaaattcgat |
107 |
Q |
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| T |
41705703 |
gtatctaaggctgcaactaactgtgtatgatgaaagataatgcagcaaaagaatgtttgagccaaatgacttgactataagaaaagaaagcaaattcgac |
41705802 |
T |
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| Q |
108 |
gcagaaccatgttgcagcaaaatagcccaaacaattgatatcagtagtaggtacacaggtagaggaaccaaaatagccctcggtaaaatacaagattcaa |
207 |
Q |
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| T |
41705803 |
gcagaaccatgttgcagcaaaatagcccaaacaattgatatcagtagtaggtacacaggtagaggaaccaaaatagccctcggtaaaatacaagattcaa |
41705902 |
T |
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| Q |
208 |
ctctattcagggtgtatacactgcgaagagtcatctgcaattagacc-nnnnnnnnnactccatcgtgagtacaattcctcgttcag |
293 |
Q |
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| T |
41705903 |
ctctattcaggatgtatacgctgcgaagagtcatctgcaattagaccttttttttttactccatcgtgagtacaatccctcgttcag |
41705989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 41715719 - 41715805
Alignment:
| Q |
166 |
gtagaggaaccaaaatagccctcggtaaaatacaagattcaactctattcagggtgtatacactgcgaagagtcatctgcaattaga |
252 |
Q |
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| T |
41715719 |
gtagaggaaccaaaatagccctcagctaaatacaagattcaactcttatcagggtgtatacaccgccaagagtcatctgcagttaga |
41715805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 41647973 - 41648040
Alignment:
| Q |
34 |
atgatgaaagataatgcagcaaaagaatgtttgagccaaatgacttgactataagaaaagaatgcaaa |
101 |
Q |
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| T |
41647973 |
atgatgaaggataatgcaccaaaaccatgtttgagacaaatgcctttgctacaagaaaagaatgcaaa |
41648040 |
T |
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