View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1583-INSERTION-4 (Length: 254)
Name: NF1583-INSERTION-4
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583-INSERTION-4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 40383925 - 40383674
Alignment:
| Q |
8 |
attgtagggatatataacagaaaagtagtaaaatttaatctcataaagcattactctgatgctnnnnnnn-ctatattaatatttgatacg----aatgc |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||| ||||| |||||||| | |||| |
|
|
| T |
40383925 |
attgtagggatatataacagaatagtagtaaaatttaatctcataaagtattactctgatggtaaaaaaaactacattaacatttgatatgttggaatgt |
40383826 |
T |
|
| Q |
103 |
aagttttaactcccaataccttttttctctatttttggtgtgtgtgggtttcataatataacattttagtttatctttgaattcttggaatttgatagtt |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
40383825 |
aagttttaactcgcaataccttttttctctatttttggtgtgtgtgggtttcataatagaacattttagtttatttttgaattcttggaatctgatagtt |
40383726 |
T |
|
| Q |
203 |
ttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383725 |
ttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgat |
40383674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 12673270 - 12673188
Alignment:
| Q |
165 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgat |
254 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| || ||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
12673270 |
attttagcttatctttgaattcttggaatctgatagttttggagtatcctcc-------taatgagcttcaaagcctcatgtttgatgat |
12673188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 16081644 - 16081726
Alignment:
| Q |
165 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgat |
254 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
16081644 |
attttagcttatctttgaattcatggaatttggtagttttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgat |
16081726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 40536367 - 40536285
Alignment:
| Q |
165 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgat |
254 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||| ||||||||||| ||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
40536367 |
attttagcttatctttgaattcttggaatctggtagctttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgat |
40536285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 45752728 - 45752646
Alignment:
| Q |
165 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgat |
254 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||| ||||||||||| ||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
45752728 |
attttagcttatctttgaattcttggaatctggtagctttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgat |
45752646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 15828421 - 15828367
Alignment:
| Q |
165 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaa |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
15828421 |
attttagcttatctttgaattcttggaatctagtagttttggagtctcctcctaa |
15828367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University