View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583-INSERTION-5 (Length: 718)
Name: NF1583-INSERTION-5
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583-INSERTION-5 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 277 - 716
Target Start/End: Original strand, 48673176 - 48673614
Alignment:
| Q |
277 |
gtattgactagcgtaaggaggttgcgttaattttgttagggctgaaagttttaataccnnnnnnntctgatgattaacattttcactcagagcctgacta |
376 |
Q |
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| T |
48673176 |
gtattgactagcgtaaggaggttgcgttaattttgttagggttgaaagtcttaataccaaaaaaatccgaagattaacatttt-actcagagcatgacta |
48673274 |
T |
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| Q |
377 |
ttacgagtcttatattgaaaaattcttccatttctttccttccaaatgatccaaagaactgcaatccaaataatattgaaagtcatacgggaatttttag |
476 |
Q |
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| T |
48673275 |
tcacgagtcatctattgaaaaattcttccatttctttcctttcaaatgatccaaagaactgcaatccaaataatattgaaagccatacgggaatttttag |
48673374 |
T |
|
| Q |
477 |
aaaatccccctaaaccaccaaactgtaagagatgatcttgaatgtttccatgtagagatgttaaaatacctagccaacctcatatcactagccaaagaga |
576 |
Q |
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| T |
48673375 |
aaaatccccctaaaccaccaaactgtaagagatgatcttgaatgtttccatgtagagatgttaaaatacctagccaacctgagatcactagccaaagaga |
48673474 |
T |
|
| Q |
577 |
accaaataccttgcaatttataaaaaggtggtctctatcttccgtataaccataattaacagagctaatattgttagataatgcctagatatgacaccta |
676 |
Q |
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| T |
48673475 |
accaaataccttgcaatttataaaaaggtggtctctatcttccgtataaccataatcagcagagctaatattgttagataatgcctagatatgacaccta |
48673574 |
T |
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| Q |
677 |
accaagagataacttgttcagcattaaactataaacaaaa |
716 |
Q |
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| T |
48673575 |
accaagagataacttgttcagcattaaactataaacaaaa |
48673614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 407 - 686
Target Start/End: Complemental strand, 18951788 - 18951509
Alignment:
| Q |
407 |
tttctttccttccaaatgatccaaagaactgcaatccaaataatattgaaagtcatacgggaatttttagaaaatccccctaaaccaccaaactgtaaga |
506 |
Q |
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||||||||||||||||||| |||||||||| ||||| ||||| |||||||| | || |||||||||||||| || ||| | ||||||||||| | |
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| T |
18951788 |
tttctttccttccaaatgacccaaagaactacaatctaaatagtattgaaaaagaggcgagaatttttagaaaacccgtttaagctgccaaactgtaaaa |
18951689 |
T |
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| Q |
507 |
gatgatcttgaatgtttccatgtagagatgttaaaatacctagccaacctcatatcactagccaaagagaaccaaataccttgcaatttataaaaaggtg |
606 |
Q |
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| T |
18951688 |
gattattctgaatgtttccatgtaaagttgttgaaatatctagccaacctaagatcaataaccaaagagaacaaaaaacattgcagtttataaagagatg |
18951589 |
T |
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| Q |
607 |
gtctctatcttccgtataaccataattaacagagctaatattgttagataatgcctagatatgacacctaaccaagagat |
686 |
Q |
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| T |
18951588 |
gtctctattttctgcataaccacaatgagcagagaaaatattatcatataatgctaaaatatgacatctaaccaagagat |
18951509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 405 - 528
Target Start/End: Complemental strand, 51739566 - 51739443
Alignment:
| Q |
405 |
catttctttccttccaaatgatccaaagaactgcaatccaaataatattgaaagtcatacgggaatttttagaaaatccccctaaaccaccaaactgtaa |
504 |
Q |
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|||||||||||||||| || | || |||| || |||||| | |||||| |||| || ||| | ||||||| ||||| | ||||| |||||||| || || |
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| T |
51739566 |
catttctttccttccagataacgcagagaattgaaatccataaaatattaaaagccagacgaggatttttaaaaaattcacctaacccaccaaattgcaa |
51739467 |
T |
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| Q |
505 |
gagatgatcttgaatgtttccatg |
528 |
Q |
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| T |
51739466 |
aaggtgatcttggatgtttccatg |
51739443 |
T |
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