View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1583-INSERTION-6 (Length: 339)
Name: NF1583-INSERTION-6
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1583-INSERTION-6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 4853801 - 4853936
Alignment:
| Q |
204 |
atataaagtagtttaaaggctagacttatacattataataatgaaagaagtaagaaattgaaatgtttacagcaaatataagtgtctcgttgatgaatta |
303 |
Q |
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| T |
4853801 |
atataaagtagtttaacggctagacttatacactataataatgcaagaagtaagaaattgaaatgtttacagcaaatataagtgtctcgttgatgaatta |
4853900 |
T |
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| Q |
304 |
tttgtaaggacatttttcttcactctatggtttgag |
339 |
Q |
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| T |
4853901 |
tttggaaggacatttttcttcactctatgttttgag |
4853936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 4853661 - 4853789
Alignment:
| Q |
21 |
tgatgtttttattgaaagtagtaatttctatttattataaaattatgtctttaatataaagtaaacaagttttaagataaactt--tacttttaatcttt |
118 |
Q |
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| T |
4853661 |
tgatgtttttattgaaagtagtaatttctatttattataaaattatgtttttaatataaagtaaacaagttctaagataaacttactacttttaatcttt |
4853760 |
T |
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| Q |
119 |
ataatgtatgtaagtttacacatgaaaaa |
147 |
Q |
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| T |
4853761 |
ataatgtatgcaagtttgcacatgaaaaa |
4853789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 4853561 - 4853615
Alignment:
| Q |
21 |
tgatgtttttattgaaagtagtaatttctatttattataaaattatgtctttaat |
75 |
Q |
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| T |
4853561 |
tgatgtttttattgaaagtagttatttctatttattataaaattatgtttttaat |
4853615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 18247807 - 18247755
Alignment:
| Q |
49 |
tatttattataaaattatgtctttaatataaagtaaacaagttttaagataaa |
101 |
Q |
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| T |
18247807 |
tatttattataaaattatgtatttaatataaaatgtataaattttaagataaa |
18247755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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