View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1583-INSERTION-7 (Length: 404)

Name: NF1583-INSERTION-7
Description: NF1583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1583-INSERTION-7
NF1583-INSERTION-7
[»] chr6 (1 HSPs)
chr6 (8-404)||(2382117-2382502)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 404
Target Start/End: Complemental strand, 2382502 - 2382117
Alignment:
Q  8 gtattgacgatgagtttaccagaatcacgattggttgtcgttatctttgataaaaactattcttcttgttagttt-aacaaaatcaaacggtgtgtgaat 106  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  2382502 gtattgacgatgagtttatcagaatcacgattggttgttgttatctta-ataaaaactattcttcttgttagttttaacaatatcaaacagtgtgtgaat 2382404  T
Q  107 ccaaatatgttacaataattcacaaattccctgtgattttgtcaaactcgtagtggatcaaaatatgttacaattaacgtgcaaaactcagcacatgcta 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2382403 ccaaatatgttacaataattcacaaattccctgtgattctgtcaaactcgtagtggatcaaaatatgttacaattaacgtgcaaaactcagcacatgcta 2382304  T
Q  207 ttgtttgaagaatttgcaaacatcaaaaccaaacatgtactatgtaaccaaaaatacagaaaaaggaccaaacatgttttgaattattaccagttttacg 306  Q
    ||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2382303 tt-----------ttgcaaacatcaaaaccaaacatgtactatgtaaccaaaaatacagaaaaaggaccaaacatgttttgaattattaccagttttacg 2382215  T
Q  307 aattccaaaacgtgtggcaatggaaatccaaaacctacgaacaggatgcatgatgttctgccacaactccacctgccgagagaatttcatcttctcca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2382214 aattccaaaacgtgtggcaatggaaatccaaaacctacgaacaggatgcatgatgttctgccacaactccacctgccgagagaatttcatcttctcca 2382117  T

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