View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15830_high_2 (Length: 440)
Name: NF15830_high_2
Description: NF15830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15830_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 338275 - 337849
Alignment:
| Q |
1 |
aaacttacataatccatgtagttataaatgaaaccggcaatcaaaatattaatcttactacactttgtttaaataaatatatttaaattttttgatagta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
338275 |
aaacttacataatccatgtagttataaatgaaaccggcaatcaaaatattaatcttactacactttgtttaaataaatatatttaaattttttgatagta |
338176 |
T |
|
| Q |
101 |
tatttcttcatactatacttcccacattatagtaccatgctactggtattatttagttatttgagagaagacatcaaattaaattcctcttttgcttatc |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
338175 |
tatttcttcatacta--cttcccacattatagtaccatgctactagtattatttagttatttgagagaagacatcaaattaaattcctcttttgcttatc |
338078 |
T |
|
| Q |
201 |
ttaactttgagaccatgtttcatgagaagcacaattgaaaggctaggagtaacttgatgatctcccacaacatggacacaatagttccacaaaatagaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
338077 |
ttaactttgagaccatgtttcatgagaagcacaattgaaaggctaggagtaacttgatgatctcccacaacatggacacaatagttccacaaaatagaag |
337978 |
T |
|
| Q |
301 |
cagcaatcatcttaacttgaatgaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaaacaa |
400 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
337977 |
cagcaatcatcttaacttgaatcaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcat-aaacaa |
337879 |
T |
|
| Q |
401 |
tgcctcctctctcagaaatccacctctctg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
337878 |
tgcctcctctctcagaaatccacctctctg |
337849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 172 - 430
Target Start/End: Complemental strand, 342144 - 341887
Alignment:
| Q |
172 |
catcaaattaaattcctcttttgcttatcttaactttgagaccatgtttcatgagaagcacaattgaaaggctaggagtaacttgatgatctcccacaac |
271 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||||||| |
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|
| T |
342144 |
catcaaattaaattccccttttggttatcttaactttgagaccatgttccatgagaagcacaattgaaaggttaggagtgacttgatgatcttccacaac |
342045 |
T |
|
| Q |
272 |
atggacacaatagttccacaaaatagaagcagcaatcatcttaacttgaatgaaagccaactctcttcccaaacaagtccttggtccagcattaaaacta |
371 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
342044 |
atggacacaatagttccacaaaacagaagcagcaaccatcttaacttgaatgaaagccaactctcttcccaaacaagtcctaggtccagcattaaaacta |
341945 |
T |
|
| Q |
372 |
aagaatttgtaagatggtgcataaaacaatgcctcctctctcagaaatccacctctctg |
430 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
341944 |
aagaacttgtaagacggcgcat-aaacaatgcctcctctctcagaaatccacctctctg |
341887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 377726 - 377603
Alignment:
| Q |
306 |
atcatcttaacttgaatgaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaaacaatgcct |
405 |
Q |
| |
|
||||| |||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||| |
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|
| T |
377726 |
atcattttaacttgaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcat-gaacaatgcta |
377628 |
T |
|
| Q |
406 |
cctctctcagaaatccacctctctg |
430 |
Q |
| |
|
||||||||||| ||||| ||||||| |
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|
| T |
377627 |
cctctctcagatatccatctctctg |
377603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 346777 - 346899
Alignment:
| Q |
307 |
tcatcttaacttgaatgaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaaacaatgcctc |
406 |
Q |
| |
|
||||||||| ||||||||| | ||| || ||||||||||||| || |||||||||||| |||||| || ||||||||||||| || ||||||||||| |
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|
| T |
346777 |
tcatcttaatttgaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtat-gaacaatgcctc |
346875 |
T |
|
| Q |
407 |
ctctctcagaaatccacctctctg |
430 |
Q |
| |
|
|||||||||| ||||| ||||||| |
|
|
| T |
346876 |
ctctctcagatatccatctctctg |
346899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 355436 - 355558
Alignment:
| Q |
307 |
tcatcttaacttgaatgaaagccaactctcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaaacaatgcctc |
406 |
Q |
| |
|
||||||||| ||||||||| | ||| || ||||||||||||| || |||||||||||| |||||| || ||||||||||||| || ||||||||||| |
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|
| T |
355436 |
tcatcttaatttgaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtat-gaacaatgcctc |
355534 |
T |
|
| Q |
407 |
ctctctcagaaatccacctctctg |
430 |
Q |
| |
|
|||||||||| ||||| ||||||| |
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|
| T |
355535 |
ctctctcagatatccatctctctg |
355558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 342307 - 342215
Alignment:
| Q |
68 |
tttaaataaatatatttaaattttttgatag-tatatttcttcatactatacttcccacattatagtaccatgctactggtattatttagttatttga |
164 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||| | ||| |||||| || || |||||||||| |||| |||||||||||||||||| |
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|
| T |
342307 |
tttaaataaatatatttaaaattttagatagatatatttcattata--ttacttctcaaatgatagtaccatactac---tattatttagttatttga |
342215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 12164242 - 12164332
Alignment:
| Q |
339 |
cccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaaacaatgcctcctctctcagaaatccacctctctg |
430 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||| |||||||| || ||| |||| || |||||| | | ||||||||||||||||| |
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|
| T |
12164242 |
cccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacat-aaactatccctcctttttgagaaatccacctctctg |
12164332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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