View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15830_low_2 (Length: 219)
Name: NF15830_low_2
Description: NF15830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15830_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 38143351 - 38143215
Alignment:
| Q |
89 |
cattactttatatatactattgaaatggtagtattttgtttttcttcctaattctaat------gtgaacctgtttaataaaaataactattacgtatat |
182 |
Q |
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| T |
38143351 |
cattactttatatatactattgaaatggtagtattttgtttttcttcctaattctaattctaatgtgaacctgtttaataaaaataactattacatatat |
38143252 |
T |
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| Q |
183 |
attatgtatggtcagagagtttaattagttgcttagt |
219 |
Q |
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| T |
38143251 |
attatgtatggtcagagagtttaattagttgcttagt |
38143215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 38156628 - 38156521
Alignment:
| Q |
114 |
tggtagtattttgtttttcttcctaattctaatgtgaac--ctgtttaataaaaataactattacgtatatattatgtatggtcagagagtttaattagt |
211 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38156628 |
tggtagtattttatttttcttcctaattctaatgtgaactactgtttaataaaaataactattacatatatattatgtatggtcagagagtttaattagt |
38156529 |
T |
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| Q |
212 |
tgcttagt |
219 |
Q |
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| T |
38156528 |
tgcttagt |
38156521 |
T |
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