View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_high_15 (Length: 402)

Name: NF15831_high_15
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_high_15
NF15831_high_15
[»] chr4 (3 HSPs)
chr4 (18-384)||(44126048-44126415)
chr4 (315-378)||(36625538-36625601)
chr4 (307-374)||(33451377-33451444)
[»] chr8 (2 HSPs)
chr8 (18-384)||(556823-557200)
chr8 (315-384)||(9028636-9028705)
[»] chr3 (1 HSPs)
chr3 (276-384)||(51976232-51976340)
[»] chr1 (3 HSPs)
chr1 (315-384)||(19806758-19806827)
chr1 (334-379)||(4076367-4076412)
chr1 (315-384)||(9383229-9383298)
[»] chr6 (1 HSPs)
chr6 (316-386)||(129102-129172)
[»] chr7 (2 HSPs)
chr7 (315-384)||(41482422-41482491)
chr7 (315-384)||(24429734-24429803)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 44126415 - 44126048
Alignment:
Q  18 atgaacgatgggttaatgattgaagtgttgattgcacgttgtgtgattctggaacagagggtttgttgcatgttttcttcatatgccccaatagttaaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  44126415 atgaacgatgggttaatgattgaagtgttgattgcacgttgtgtgattctggaacagagggtttgttgcatgttttcttcatatgccccaatagtcgaac 44126316  T
Q  118 catttggagaaggactggaattgatgtggatcgaatcagaaattgacttcagaattaggaacagattaacaaagaatttgatgtcgattagcataaaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  44126315 catttggagaaggactggaattgatgtggatcgaatcagaaattgacttcagaattaggaacagattaatatagaatttgatgtcgattagcataaaatt 44126216  T
Q  218 agaagg--nnnnnnnnttgaaagtcagagtggagtggttgcggtgggagttgaagcaggttcctttgttaataaaacaatgcgcgtctgatgtttttctt 315  Q
    ||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||| |    
T  44126215 agaaggaaaaaaaaaattgaaagtcagagtggagtggttgcggtgggagttgaagcaggttcctttgttaataaaacaatacac-tgtgatgtttttcct 44126117  T
Q  316 atcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  44126116 atcaagttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaat 44126048  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 36625538 - 36625601
Alignment:
Q  315 tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggatt 378  Q
    ||||| ||||||||| || ||||||  |||||||||||  ||||||||||||||||||||||||    
T  36625538 tatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggatt 36625601  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 33451444 - 33451377
Alignment:
Q  307 gtttttcttatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggatag 374  Q
    |||| |||||||| |||| |||| |||||||||| |||||||| ||  ||||||| ||||||||||||    
T  33451444 gtttatcttatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatag 33451377  T

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Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 557200 - 556823
Alignment:
Q  18 atgaacgatgggttaatgattgaagtgttgattgcacgttgtgtgattctggaacagagggtttgttgcatgttttcttcatatgccccaatagttaaac 117  Q
    |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||  ||| |||||  |||    
T  557200 atgaacgatgggttaacgattgaagtgttgattgcacattgtgtaattctggaacagagggtttgttgcatgttttcttcatatatccc-atagtcgaac 557102  T
Q  118 catttggagaaggactggaattgatg-tggatcgaatcagaaattgacttcagaattaggaacagattaacaaagaatttgatgtcgattagcataaaat 216  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  557101 catttggaaaaggactggaattgatgttggatcgaatcagaaattggcttcagaattaggaatagattaacatagaatttgatgtcgattagcataaaat 557002  T
Q  217 tagaaggnnnnnnnnttgaaagtcagagtg----------gagtggttgcggtgggagttgaagcaggttcctttgttaataaaacaatgcgcgtctgat 306  Q
    ||||| |        |||||||||||||||          |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  557001 tagaaag-aaaaaaattgaaagtcagagtggagtggagttgagtggttgcagtgggagttgaagcgggttcctttgttaataaaacaatacgcgtgtgat 556903  T
Q  307 gtttttcttatcaagttgctaactcatc--aaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    |||||   ||||| ||||||||| || |  ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  556902 gttttaactatcatgttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaat 556823  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 9028636 - 9028705
Alignment:
Q  315 tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    ||||| ||||||||| |||||||||| |||||| ||||  ||||||| | ||||||||||||||||||||    
T  9028636 tatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaat 9028705  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 384
Target Start/End: Complemental strand, 51976340 - 51976232
Alignment:
Q  276 tcctttgttaataaaacaatgcgcgtctgatgtttttcttatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggatagg 375  Q
    |||||||||||||||||||| || || ||||||||||  ||||| |||| |||| || |||||   |||||||||||||||||| ||||||||||||| |    
T  51976340 tcctttgttaataaaacaatacgtgtgtgatgtttttactatcaggttgttaacccaccaaaattcaaggattagaaaaacaaatggtgaataggataag 51976241  T
Q  376 attaaaaat 384  Q
    |||| ||||    
T  51976240 attagaaat 51976232  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 19806758 - 19806827
Alignment:
Q  315 tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    ||||| |||| |||| || ||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaat 19806827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 4076367 - 4076412
Alignment:
Q  334 caaaaacaaaggattagaaaaacaaagggtgaataggataggatta 379  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4076367 caaaaactaaggattagaaaaacaaagagtgaataggataggatta 4076412  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 9383229 - 9383298
Alignment:
Q  315 tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    ||||| ||||||||| |||||||||  |||||| | || |||||||||||| ||||||| ||||| ||||    
T  9383229 tatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaat 9383298  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 129102 - 129172
Alignment:
Q  316 atcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaatga 386  Q
    |||| ||||||| | |||||||||| || ||| | || ||||||||||||||| |||||||||||||||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatga 129172  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 41482422 - 41482491
Alignment:
Q  315 tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    ||||| ||||||||| || ||||||| |||||| | || |||||||||||| ||||||| ||||||||||    
T  41482422 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaat 41482491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 24429803 - 24429734
Alignment:
Q  315 tatcaagttgctaactcatcaaaaacaaaggattagaaaaacaaagggtgaataggataggattaaaaat 384  Q
    ||||| ||||||||| || ||||||| |||||| | || |||||||||||| || |||||||||| ||||    
T  24429803 tatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaat 24429734  T

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