View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_high_17 (Length: 387)
Name: NF15831_high_17
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 372
Target Start/End: Original strand, 52599347 - 52599710
Alignment:
| Q |
7 |
gaagcacccttaaaatacaataaaatataatgcttctccaatggtttcannnnnnnnnnnncaagataacaattaacgacaacaaaaaattgcttagtag |
106 |
Q |
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| T |
52599347 |
gaagcacccttaaaatacaataaaatataatgcttctccaatggtttcattttttgtttttcaagataacaattaacgacaacaaaaaattgcttagtag |
52599446 |
T |
|
| Q |
107 |
aaaatcaaacaggaaactcatcaggaaatggttgctgttgccagttgttgaatttcaccccttcatatttggctatgtcaataccgaccaagacggctca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52599447 |
aaaatcaaacaggaaactcatcaggaaatggttgctgttgccagttgttgaatttcaccccttcatatttggctatgtcaataccgaccaagacggctca |
52599546 |
T |
|
| Q |
207 |
acttcaacttcaacttcaacaagaatacattcttctaacaatgcctcgtagattacttcaactccaaggtttcatttttgtaccttgctaatcaaatgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52599547 |
acttcaacttcaacttcaacaagaatacattcttctaacaatgcctcgtagattacttcaactccaaggtttcatttttgtaccttgctaatcaaatgat |
52599646 |
T |
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| Q |
307 |
atacaatgtaatgtaataattggaatatgatgtaataagcgcatttctatagccgtgttagttttt |
372 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
52599647 |
atacaa--taatgtaataattggaatatgatgtaataagcgcatttttatagctgtgttagttttt |
52599710 |
T |
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