View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15831_high_19 (Length: 372)

Name: NF15831_high_19
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15831_high_19
NF15831_high_19
[»] chr5 (29 HSPs)
chr5 (1-247)||(33869409-33869658)
chr5 (5-134)||(37857459-37857588)
chr5 (1-130)||(7183832-7183960)
chr5 (1-124)||(15912383-15912505)
chr5 (1-125)||(39055765-39055888)
chr5 (247-354)||(13032036-13032141)
chr5 (246-354)||(32129669-32129776)
chr5 (247-354)||(11775709-11775816)
chr5 (241-354)||(4895787-4895899)
chr5 (247-354)||(37266648-37266754)
chr5 (254-350)||(39902339-39902434)
chr5 (247-354)||(35660661-35660767)
chr5 (244-354)||(1475690-1475799)
chr5 (247-354)||(40753214-40753320)
chr5 (248-354)||(4592719-4592823)
chr5 (247-353)||(8441024-8441129)
chr5 (247-354)||(14349721-14349826)
chr5 (254-354)||(18625473-18625572)
chr5 (39-125)||(16667659-16667746)
chr5 (73-131)||(35915982-35916040)
chr5 (247-354)||(34827111-34827215)
chr5 (274-318)||(43309062-43309106)
chr5 (39-93)||(23334744-23334798)
chr5 (72-131)||(4675624-4675685)
chr5 (249-309)||(10173867-10173927)
chr5 (245-315)||(23253708-23253778)
chr5 (249-313)||(3057246-3057310)
chr5 (249-309)||(10242752-10242811)
chr5 (39-107)||(13363750-13363818)
[»] chr4 (42 HSPs)
chr4 (1-131)||(20581900-20582030)
chr4 (1-131)||(34986858-34986988)
chr4 (1-131)||(20581576-20581705)
chr4 (247-354)||(12153088-12153194)
chr4 (247-354)||(12241460-12241566)
chr4 (1-133)||(2847249-2847382)
chr4 (246-354)||(34778337-34778444)
chr4 (247-316)||(33247217-33247286)
chr4 (247-354)||(5763214-5763320)
chr4 (247-354)||(19901970-19902076)
chr4 (247-318)||(52018700-52018771)
chr4 (247-354)||(56558196-56558302)
chr4 (247-354)||(18207092-18207198)
chr4 (247-354)||(5416517-5416625)
chr4 (245-354)||(23610557-23610665)
chr4 (245-350)||(39862432-39862536)
chr4 (247-318)||(17080727-17080798)
chr4 (39-133)||(25573210-25573304)
chr4 (254-350)||(38079776-38079871)
chr4 (244-315)||(47922165-47922236)
chr4 (266-354)||(3952222-3952309)
chr4 (52-134)||(48076904-48076987)
chr4 (258-315)||(12312593-12312650)
chr4 (258-355)||(33262603-33262699)
chr4 (48-131)||(50562665-50562749)
chr4 (254-318)||(24073541-24073605)
chr4 (39-134)||(9551556-9551650)
chr4 (48-134)||(6385340-6385426)
chr4 (39-129)||(24687299-24687389)
chr4 (39-127)||(22180205-22180294)
chr4 (39-107)||(21098088-21098156)
chr4 (249-309)||(25442271-25442331)
chr4 (48-95)||(30779449-30779496)
chr4 (39-107)||(18924243-18924311)
chr4 (16-59)||(14499287-14499330)
chr4 (255-314)||(37002332-37002391)
chr4 (255-314)||(56269158-56269217)
chr4 (249-302)||(3326435-3326488)
chr4 (245-278)||(34075783-34075816)
chr4 (254-302)||(23119487-23119535)
chr4 (261-301)||(26428574-26428614)
chr4 (52-88)||(36621018-36621054)
[»] scaffold0717 (1 HSPs)
scaffold0717 (1-128)||(6503-6630)
[»] chr7 (31 HSPs)
chr7 (1-131)||(45402176-45402306)
chr7 (243-354)||(21151065-21151175)
chr7 (1-128)||(21405349-21405476)
chr7 (245-354)||(12139243-12139349)
chr7 (249-354)||(47226126-47226229)
chr7 (1-95)||(6796728-6796822)
chr7 (259-350)||(7362497-7362587)
chr7 (250-353)||(16366438-16366540)
chr7 (247-352)||(45260481-45260586)
chr7 (254-355)||(4888391-4888491)
chr7 (246-354)||(25084780-25084887)
chr7 (39-131)||(27334667-27334759)
chr7 (254-353)||(18198180-18198278)
chr7 (246-352)||(44647881-44647983)
chr7 (258-354)||(9559106-9559201)
chr7 (48-131)||(5758276-5758359)
chr7 (72-132)||(34876319-34876379)
chr7 (72-131)||(32089942-32090001)
chr7 (249-315)||(29630967-29631033)
chr7 (48-128)||(16932568-16932648)
chr7 (48-128)||(16937951-16938031)
chr7 (254-314)||(32915883-32915943)
chr7 (39-131)||(39006822-39006914)
chr7 (48-131)||(44140050-44140133)
chr7 (48-131)||(46345840-46345923)
chr7 (255-301)||(34986049-34986095)
chr7 (249-314)||(6882149-6882214)
chr7 (12-59)||(12286680-12286727)
chr7 (249-302)||(32916098-32916151)
chr7 (52-131)||(32091524-32091604)
chr7 (255-315)||(47500373-47500433)
[»] scaffold0012 (2 HSPs)
scaffold0012 (2-131)||(119833-119962)
scaffold0012 (244-354)||(207977-208086)
[»] chr2 (24 HSPs)
chr2 (1-131)||(24023949-24024079)
chr2 (254-354)||(28564815-28564915)
chr2 (247-354)||(35316742-35316848)
chr2 (254-354)||(39465699-39465798)
chr2 (254-354)||(13238605-13238704)
chr2 (247-313)||(41983431-41983497)
chr2 (247-315)||(10877619-10877686)
chr2 (48-136)||(36635745-36635834)
chr2 (39-130)||(43823831-43823923)
chr2 (73-132)||(37072713-37072772)
chr2 (72-131)||(39548522-39548581)
chr2 (247-318)||(45625149-45625216)
chr2 (249-318)||(2061296-2061365)
chr2 (258-318)||(374525-374585)
chr2 (247-352)||(23259541-23259645)
chr2 (71-129)||(16141319-16141377)
chr2 (258-312)||(42075456-42075510)
chr2 (247-284)||(673185-673222)
chr2 (249-318)||(12949389-12949458)
chr2 (48-125)||(28478217-28478293)
chr2 (255-314)||(8988791-8988850)
chr2 (255-314)||(29188588-29188647)
chr2 (48-93)||(20710747-20710792)
chr2 (52-131)||(25996058-25996138)
[»] scaffold0074 (1 HSPs)
scaffold0074 (5-131)||(35759-35885)
[»] scaffold0006 (2 HSPs)
scaffold0006 (1-131)||(209956-210086)
scaffold0006 (246-318)||(73927-73999)
[»] chr1 (31 HSPs)
chr1 (1-127)||(20481449-20481575)
chr1 (247-353)||(12380963-12381068)
chr1 (247-353)||(12385030-12385135)
chr1 (247-318)||(45977939-45978010)
chr1 (243-353)||(7841763-7841872)
chr1 (244-354)||(12151681-12151790)
chr1 (247-354)||(50484303-50484409)
chr1 (1-63)||(13591103-13591165)
chr1 (39-131)||(16117003-16117096)
chr1 (247-352)||(23862009-23862114)
chr1 (73-131)||(30788883-30788941)
chr1 (246-350)||(40328192-40328297)
chr1 (257-318)||(50294150-50294211)
chr1 (247-350)||(48327209-48327312)
chr1 (254-355)||(2845189-2845290)
chr1 (48-131)||(37643096-37643179)
chr1 (73-131)||(44261182-44261240)
chr1 (245-294)||(35977881-35977930)
chr1 (73-129)||(19216661-19216717)
chr1 (72-131)||(31528901-31528960)
chr1 (72-125)||(2741604-2741657)
chr1 (249-314)||(30210801-30210866)
chr1 (72-131)||(20372858-20372917)
chr1 (248-291)||(32361374-32361417)
chr1 (72-131)||(33097906-33097965)
chr1 (39-93)||(23319049-23319103)
chr1 (49-107)||(45890559-45890617)
chr1 (72-126)||(51800959-51801013)
chr1 (249-318)||(1609625-1609694)
chr1 (258-315)||(40988643-40988700)
chr1 (73-134)||(51420987-51421048)
[»] scaffold0460 (1 HSPs)
scaffold0460 (1-124)||(2250-2373)
[»] chr8 (26 HSPs)
chr8 (246-354)||(30426721-30426828)
chr8 (246-354)||(36991272-36991379)
chr8 (247-350)||(41511179-41511281)
chr8 (243-315)||(5033019-5033091)
chr8 (246-354)||(10652669-10652777)
chr8 (254-354)||(28069643-28069742)
chr8 (247-318)||(12177651-12177722)
chr8 (247-318)||(12422079-12422150)
chr8 (247-354)||(28318954-28319060)
chr8 (246-353)||(10672565-10672671)
chr8 (73-131)||(2523607-2523665)
chr8 (248-318)||(40695334-40695404)
chr8 (253-318)||(24101939-24102004)
chr8 (73-131)||(40246534-40246592)
chr8 (39-95)||(24472987-24473043)
chr8 (246-354)||(44859219-44859325)
chr8 (72-134)||(30652493-30652555)
chr8 (37-95)||(45409512-45409570)
chr8 (255-315)||(8412179-8412239)
chr8 (72-131)||(28698031-28698090)
chr8 (73-131)||(12356188-12356246)
chr8 (264-314)||(37966533-37966583)
chr8 (249-318)||(27490093-27490162)
chr8 (249-298)||(39143443-39143492)
chr8 (55-107)||(1672743-1672795)
chr8 (247-315)||(28403232-28403300)
[»] chr6 (21 HSPs)
chr6 (246-354)||(29698079-29698186)
chr6 (247-354)||(4804365-4804471)
chr6 (247-354)||(1249198-1249304)
chr6 (247-354)||(7162001-7162107)
chr6 (17-130)||(32557105-32557218)
chr6 (246-350)||(32737790-32737893)
chr6 (247-354)||(21159421-21159523)
chr6 (270-354)||(17944102-17944185)
chr6 (254-314)||(27826462-27826522)
chr6 (49-93)||(4101999-4102043)
chr6 (39-131)||(18612318-18612411)
chr6 (39-131)||(29163674-29163766)
chr6 (72-131)||(16967462-16967521)
chr6 (255-301)||(227668-227714)
chr6 (273-318)||(30460763-30460808)
chr6 (73-129)||(4338070-4338126)
chr6 (275-350)||(12412582-12412656)
chr6 (247-292)||(13089853-13089899)
chr6 (17-59)||(18755699-18755741)
chr6 (39-95)||(10588705-10588760)
chr6 (39-95)||(25119212-25119268)
[»] chr3 (30 HSPs)
chr3 (247-354)||(43719999-43720105)
chr3 (5-131)||(9639845-9639970)
chr3 (245-354)||(19830483-19830593)
chr3 (246-318)||(40851689-40851761)
chr3 (249-355)||(34373750-34373855)
chr3 (247-350)||(2229900-2230002)
chr3 (259-354)||(34373637-34373731)
chr3 (247-353)||(12402883-12402988)
chr3 (270-352)||(27033591-27033672)
chr3 (1-57)||(32233608-32233664)
chr3 (249-315)||(550906-550972)
chr3 (39-132)||(23700059-23700152)
chr3 (39-132)||(23718514-23718607)
chr3 (39-132)||(23736970-23737063)
chr3 (48-132)||(23756263-23756347)
chr3 (259-318)||(46167322-46167381)
chr3 (258-353)||(52859433-52859528)
chr3 (53-131)||(32233757-32233835)
chr3 (37-112)||(16276684-16276759)
chr3 (72-131)||(53595572-53595631)
chr3 (250-288)||(25506612-25506650)
chr3 (73-134)||(39194446-39194507)
chr3 (254-314)||(3009173-3009233)
chr3 (39-91)||(47729138-47729190)
chr3 (255-315)||(48084744-48084804)
chr3 (255-314)||(31523749-31523808)
chr3 (255-314)||(42613015-42613074)
chr3 (254-315)||(20485808-20485869)
chr3 (249-318)||(32577451-32577519)
chr3 (254-314)||(49289042-49289102)
[»] scaffold0250 (1 HSPs)
scaffold0250 (246-318)||(7063-7135)
[»] scaffold0035 (1 HSPs)
scaffold0035 (245-302)||(16500-16557)
[»] scaffold0456 (1 HSPs)
scaffold0456 (275-354)||(13641-13719)
[»] scaffold0008 (1 HSPs)
scaffold0008 (254-318)||(9285-9349)
[»] scaffold0009 (1 HSPs)
scaffold0009 (244-348)||(6493-6588)
[»] scaffold0194 (1 HSPs)
scaffold0194 (39-89)||(28631-28681)
[»] scaffold0126 (1 HSPs)
scaffold0126 (254-318)||(22529-22593)
[»] scaffold0221 (1 HSPs)
scaffold0221 (16-59)||(20520-20563)
[»] scaffold0069 (1 HSPs)
scaffold0069 (72-131)||(52020-52079)
[»] scaffold1251 (1 HSPs)
scaffold1251 (14-59)||(438-483)
[»] scaffold0097 (1 HSPs)
scaffold0097 (48-93)||(14586-14631)
[»] scaffold0468 (1 HSPs)
scaffold0468 (251-307)||(5531-5587)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33869409 - 33869658
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||||  ||| || |||||||  ||||||||||||||| ||||    
T  33869409 attgtggtttcgcttgaaggtatatgataaaatgggttggggtgtacgaagcaattatgttgagctatcagttaatggattgggatttatgcagggtaca 33869508  T
Q  101 taaggatgtcttatgcatgataaccgcaccctttactaagtggggtgtttt---gaattgaaattttgatgcctttatggtataagtgtgtatgtcatgt 197  Q
    ||| |||| |||||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  33869509 taaagatgccttatgcaagataaccgcaccctttactaagtggggtgttttattgaattgaaattttgatgcctttatggtataagtgtgtatgtcatgt 33869608  T
Q  198 atttattgtcatacctagccacgtagttaccatacttagccacaggaatg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869609 atttattgtcatacctagccacgtagttaccatacttagccacaggaatg 33869658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 37857459 - 37857588
Alignment:
Q  5 tggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataag 104  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||| |||||  |||||||||||||||||||||||| | ||||||    
T  37857459 tggtttcgcttgggggtgtatgacaaaatgggttggggtgtatgaaacaattatgttgggctaccggttaatgggctgggatttatgcagggtgcataag 37857558  T
Q  105 gatgtcttatgcatgataaccgcacccttt 134  Q
    |||| |||||||||||||||||||||||||    
T  37857559 gatgccttatgcatgataaccgcacccttt 37857588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 7183832 - 7183960
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||| | |||||  ||||||||||| |||||||||||| | ||    
T  7183832 attgtggtttcgcttgggggtgtatgacaaaatgagttggg-tgtacgaagcaattatgttaggctacctgttaatgggctgagatttatgcagggtgca 7183930  T
Q  101 taaggatgtcttatgcatgataaccgcacc 130  Q
    ||||||||||||||||||||||||||||||    
T  7183931 taaggatgtcttatgcatgataaccgcacc 7183960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 15912505 - 15912383
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| |  |||||||||||||||||||||||| | ||    
T  15912505 attgtggtttcgcttggaggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgg-ctatcggttaatgggctgggatttatgcagggtgca 15912407  T
Q  101 taaggatgtcttatgcatgataac 124  Q
    |||||||| |||||||||||||||    
T  15912406 taaggatgccttatgcatgataac 15912383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39055888 - 39055765
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    |||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |||||  ||||||||| |||||||||||||| | ||    
T  39055888 attgtggtttcgcttgggagtgtatgacaaaatgggttgaggtgtacgaagcaattatgttgggctaccggttaatgggcggggatttatgcagggtgca 39055789  T
Q  101 taaggatgtcttatgcatgataacc 125  Q
    ||| |||| ||||||||||||||||    
T  39055788 taaagatg-cttatgcatgataacc 39055765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 13032036 - 13032141
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||    
T  13032036 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaa--taaaatataattaatgatg 13032133  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  13032134 gtgggacc 13032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 32129776 - 32129669
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||        |||||||||||||||||||    
T  32129776 tgggttaggatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgat 32129678  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  32129677 ggtgggacc 32129669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 11775709 - 11775816
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||        |||||||||||||||||| |    
T  11775709 gggttaagatcctctccatttatgtgtttctccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaaagtaaaatataattaatgacg 11775808  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  11775809 gtgggacc 11775816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 4895899 - 4895787
Alignment:
Q  241 aggaatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataatta 340  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||        ||||||||||||||    
T  4895899 aggaacgggttaggatcctcttcatttatatgtttctccatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataatta 4895801  T
Q  341 atgatggtgggacc 354  Q
    ||||||||||||||    
T  4895800 atgatggtgggacc 4895787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 37266648 - 37266754
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||    
T  37266648 gggttaggatcctctccatttacgtgtttttccatttcttcaatttggagagataaagacacataaaatcttgaaaaaac-taaaatataattaatgatg 37266746  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  37266747 gtgggacc 37266754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 39902339 - 39902434
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||    
T  39902339 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-aaaaaaagtaaaatataattaatgatggtgg 39902434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 35660767 - 35660661
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||    
T  35660767 gggttaagatcctctctatttatgtgtttctccgtttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 35660669  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  35660668 gtgggacc 35660661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 1475799 - 1475690
Alignment:
Q  244 aatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatg 343  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||        |||||||||||||||||    
T  1475799 aatgggttaggatcctcttcatttatgtgttttttcatttcttcaatttggagtgataaagacacataaaatctt-gaaaaaagtaaaatataattaatg 1475701  T
Q  344 atggtgggacc 354  Q
    |||||||||||    
T  1475700 atggtgggacc 1475690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 40753320 - 40753214
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||   |||||||||||||        ||||||||||||||||||||    
T  40753320 gggttaggatcctctccatttatgtgcttctccatttctttaatttggagagataaaagcacataaaatctt-gaaaaaagtaaaatataattaatgatg 40753222  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  40753221 gtgggacc 40753214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 354
Target Start/End: Original strand, 4592719 - 4592823
Alignment:
Q  248 ggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatgg 347  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||        |||||||||||||||||||||    
T  4592719 ggttagaatcctctccatttatgtgtttctccatttcttcaatttggagagataa-tacacataaaatatt-gaaaaaagtaaaatataattaatgatgg 4592816  T
Q  348 tgggacc 354  Q
    |||||||    
T  4592817 tgggacc 4592823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 8441129 - 8441024
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||  ||||||| ||||||        ||||||||||||||||||||    
T  8441129 gggttaggatcatctccatttatgtgtttctccgtttcatcaatttggagagataaatacacatacaatctt-aaaaaaagtaaaatataattaatgatg 8441031  T
Q  347 gtgggac 353  Q
    |||||||    
T  8441030 gtgggac 8441024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 14349721 - 14349826
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||        ||||||||||||||||||||    
T  14349721 gggttaagatcttctccatttatgtgtttctccatttctttaatttggaaagataaagacacat-aaatctt-gaaaaaagtaaaatataattaatgatg 14349818  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  14349819 gtgggacc 14349826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 354
Target Start/End: Complemental strand, 18625572 - 18625473
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    |||||||||||||||||||||| || |||||||  |||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||    
T  18625572 gatcctctccatttatgtgtttttcaatttctttcatttggagagataaagacacataaaatcttgaaaaaaa-taaaatataattaatgatggtgggac 18625474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 16667746 - 16667659
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataacc 125  Q
    ||||| || |||||||||||||||| |||||  |||||||||||||||||||||| | | ||||||||| | ||||||||||||||||    
T  16667746 ggggtgtaggaagcaattatgttgggctaccggttaatgggctgggatttatgcacggtgcataaggatttccttatgcatgataacc 16667659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 35915982 - 35916040
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||||||||||||||||||| | |||||||||  |||||||||||||||| |||||    
T  35915982 taatgggctgggatttatgcagggtgcataaggattccttatgcatgataaccacaccc 35916040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 34827111 - 34827215
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||| |||||||| ||||| |||||||||| |||||| |||||||| |||||  ||||| ||        ||||||||||||||| ||||    
T  34827111 gggttaggatcctcaccatttatatgttt-tccatttcttaaatttgaagagataaagacac--aaaattttgaaaaaaagtaaaatataattaaagatg 34827207  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  34827208 gtgggacc 34827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 43309062 - 43309106
Alignment:
Q  274 ttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  43309062 ttctccatttcttcaatttgaagagataaagacacataaaatctt 43309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 23334798 - 23334744
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgca 93  Q
    ||||| || |||| |||||||||||||||||  ||||||||||||||||||||||    
T  23334798 ggggtgtaggaagaaattatgttggactaccggttaatgggctgggatttatgca 23334744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 4675624 - 4675685
Alignment:
Q  72 ttaatgggctgggatttatgcag-gatacataa-ggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||||||||||||||||||| | | ||||| |||| |||||||||||||||||||||||    
T  4675624 ttaatgggctgggatttatgcagagctgcataaaggatttcttatgcatgataaccgcaccc 4675685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 10173867 - 10173927
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacaca 309  Q
    |||| ||||||||||||||||||  ||||||||||| |  |||||||||||||| ||||||    
T  10173867 gttaagatcctctccatttatgtccttctccatttccttcatttggagagataaagacaca 10173927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 23253708 - 23253778
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||||||  |||||| ||||||||  | ||||||||||||| | |||||||||||||  ||||||||||||    
T  23253708 atgggttgagatcctatccatttaaatttttctccatttctaccatttggagagatagagacacataaaat 23253778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 3057310 - 3057246
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaa 313  Q
    |||| |||| |||||| |||||| | ||||||||||||| ||||| |||||||| ||||| ||||    
T  3057310 gttaagatcttctccaattatgtctctctccatttcttctatttgaagagataaagacacttaaa 3057246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 10242752 - 10242811
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacaca 309  Q
    |||||||||||||  |||||||| | ||||||||||| | |||||||||||||| ||||||    
T  10242752 gttaggatcctctt-atttatgtttctctccatttctaccatttggagagataaagacaca 10242811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 13363750 - 13363818
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggat 107  Q
    ||||| || ||| |||||||||||| |||||  ||||||| |||||||||||||| | | |||||||||    
T  13363750 ggggtgtaggaaacaattatgttgggctaccggttaatggactgggatttatgcacggtgcataaggat 13363818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 20582030 - 20581900
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||||||||| | | ||    
T  20582030 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttggactaccggttaatgggttgggatttatgcaaggtgca 20581931  T
Q  101 taaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||||||||||    
T  20581930 taaggatgccttatgcatgataaccgcaccc 20581900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34986858 - 34986988
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||| | |||||||||| | ||    
T  34986858 attgtggtttcgctggggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgggctaccggttaatgggctgtgttttatgcagggtgca 34986957  T
Q  101 taaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||||||||||    
T  34986958 taaggatgccttatgcatgataaccgcaccc 34986988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 20581705 - 20581576
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||| |||||||||| | |  |    
T  20581705 attgtggtttcgcttgggg-tgtatgacaaaatgggttggggtgtacgaaccaattatgttggactaccggttaatgggctgagatttatgcaaggtgta 20581607  T
Q  101 taaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||||||||||    
T  20581606 taaggatgccttatgcatgataaccgcaccc 20581576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 12153088 - 12153194
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||    
T  12153088 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 12153186  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  12153187 gtgggacc 12153194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 12241566 - 12241460
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||    
T  12241566 gggttaggatcctcttcatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 12241468  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  12241467 gtgggacc 12241460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2847382 - 2847249
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaa--tgggctgggatttatgcaggata 98  Q
    ||||||||||| ||||||||| || |||||||||| ||||| | ||||||||||||||||||| |||||  ||||  |||||||||||||||||||| |     
T  2847382 attgtggtttctcttgggggtgtacgacaaaatggattggg-tgtacgaagcaattatgttgggctaccggttaaaatgggctgggatttatgcagggtg 2847284  T
Q  99 cataaggatgtcttatgcatgataaccgcaccctt 133  Q
     ||||||||||||||| ||||||||||||||||||    
T  2847283 tataaggatgtcttatacatgataaccgcaccctt 2847249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 34778337 - 34778444
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||        |||||||||||||||||||    
T  34778337 tgggttagaatcctctccatttatgtgtttctccatttcttcaatgtggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgat 34778435  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  34778436 ggtgggacc 34778444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 33247286 - 33247217
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33247286 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatc 33247217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 5763320 - 5763214
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||        ||||||||||||||||||||    
T  5763320 gggttaggatcatctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgatg 5763222  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  5763221 gtgggacc 5763214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 19902076 - 19901970
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||        ||||||||||||||||||||    
T  19902076 gggttaagatcctctccatttatgtgtttctctatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgatg 19901978  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  19901977 gtgggacc 19901970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 52018700 - 52018771
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  52018700 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaaaacacataaaatctt 52018771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 56558196 - 56558302
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||        ||||||||||||||||||||    
T  56558196 gggttaggatcctctccatttatatgtttctctatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgatg 56558294  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  56558295 gtgggacc 56558302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 18207198 - 18207092
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||        ||||||||||||||||||||    
T  18207198 gggttaggatcctctccatttatgtgtttctcaatttcttcaatttggaaagataaagacacataaaatctt-gaaaaaggtaaaatataattaatgatg 18207100  T
Q  347 gtgggacc 354  Q
     |||||||    
T  18207099 atgggacc 18207092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 5416625 - 5416517
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatc-ttnnnnnnnngtaaaatataattaatgat 345  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||        |||||||||||||||||||    
T  5416625 gggttagaatcctctcaatttatgtgtttctccatttcttcaatttggacagataaagacacataaaatctttaaaaaaaagtaaaatataattaatgat 5416526  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  5416525 ggtgggacc 5416517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 23610557 - 23610665
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatga 344  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||        |||||||||| |||||||    
T  23610557 atgggttaagatcctctccatttatatgtttctccatttcttcaatttggagagataaagatacataaaatctt-gaaaaaagtaaaatatatttaatga 23610655  T
Q  345 tggtgggacc 354  Q
    ||||||||||    
T  23610656 tggtgggacc 23610665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 39862432 - 39862536
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatga 344  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||    
T  39862432 atgggttaggatcctcttcatttatgtgtttctcattttcttcaatttggagagataaagacacataaaatctt-aaaaaaagtaaaatataattaatga 39862530  T
Q  345 tggtgg 350  Q
    ||||||    
T  39862531 tggtgg 39862536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 17080798 - 17080727
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  17080798 gggttaggatcccctccatttatgtgtttctccatttcttcaatttggagagataaagacagataaaatctt 17080727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 25573304 - 25573210
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccctt 133  Q
    ||||| ||||||||||||||||||| |||||  |||||||||||||||||||||||| | ||||| |||  ||||||||||||||||||||||||    
T  25573304 ggggtgtacgaagcaattatgttgggctaccggttaatgggctgggatttatgcagggtgcataaagattccttatgcatgataaccgcaccctt 25573210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 38079871 - 38079776
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgg 350  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||    
T  38079871 gatcctctccatttatgcgtttctccattttttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatggtgg 38079776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 47922236 - 47922165
Alignment:
Q  244 aatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  47922236 aatgggttaggatcctctcaatttatgtgtttctccatttcttcaatttagagagataaagacacgtaaaat 47922165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 3952309 - 3952222
Alignment:
Q  266 ttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggacc 354  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||| ||||    
T  3952309 ttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatggtgagacc 3952222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 48076987 - 48076904
Alignment:
Q  52 caattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcacccttt 134  Q
    ||||||||||||||||||  |||||||||||||||||||||| | | ||||||||| | |||||||||||||||||||||||||    
T  48076987 caattatgttggactaccggttaatgggctgggatttatgcacggtgcataaggatttccttatgcatgataaccgcacccttt 48076904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 12312650 - 12312593
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12312650 ctctccatttatgtgtttctccatttcttcaatttagagagataaagacacataaaat 12312593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 33262699 - 33262603
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggacct 355  Q
    |||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||| ||        |||||||||||||||||||||||||||||    
T  33262699 ctctccatttatgtatttttctatttcttcaatttggagagataaagacacataaaat-tttaaaaaaagtaaaatataattaatgatggtgggacct 33262603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 50562749 - 50562665
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccc 131  Q
    |||||||||||||||  |||||  |||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||    
T  50562749 gaagcaattatgttgagctaccggttaatgggctgggatttatgcacgatgcataaggatttccttatgcatgataaccgcaccc 50562665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 24073541 - 24073605
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||| | | |||||||||||||    
T  24073541 gatcctctccatttatgtgtttctcaatttcttccatttggagagatgaaggcacataaaatctt 24073605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 9551650 - 9551556
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcacccttt 134  Q
    ||||| || |||||||||||||||| |||||| |||||| ||||| | ||||||||| | |||||||||  |||||||||||||||| ||||||||    
T  9551650 ggggtgtaggaagcaattatgttgggctaccagttaatgagctgg-acttatgcagggtgcataaggattccttatgcatgataaccacacccttt 9551556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 6385426 - 6385340
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcacccttt 134  Q
    |||||||||||||||| |||||  ||||||||||| || ||||||||| | |||||||||  ||||| |||||||||| ||||||||    
T  6385426 gaagcaattatgttgggctaccggttaatgggctgtgacttatgcagggtgcataaggattccttatacatgataaccacacccttt 6385340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 24687299 - 24687389
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcac 129  Q
    ||||| || |||||||||||| ||| |||||  ||||||||||| || ||||||| ||| |||||||||  ||||||||||||||||||||    
T  24687299 ggggtgtaggaagcaattatgatgggctaccggttaatgggctgagacttatgcatgatgcataaggattccttatgcatgataaccgcac 24687389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 22180294 - 22180205
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgc 127  Q
    ||||| || ||| |||||||||||| ||||| ||||||||||||||||||||||| | | ||||||||| | ||||||||  ||||||||    
T  22180294 ggggtgtaggaaacaattatgttggcctaccgattaatgggctgggatttatgcacggtgcataaggatttccttatgcaccataaccgc 22180205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 21098088 - 21098156
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggat 107  Q
    ||||| || |||||||||||||||| |||||| ||||||||||| |||||||||| | | |||||||||    
T  21098088 ggggtgtatgaagcaattatgttgggctaccagttaatgggctgtgatttatgcatggtgcataaggat 21098156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 25442331 - 25442271
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacaca 309  Q
    |||| |||||||||||||||||   |||||||||||||| |||||||||||||| ||||||    
T  25442331 gttaagatcctctccatttatggccttctccatttcttccatttggagagataaagacaca 25442271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 30779496 - 30779449
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcagg 95  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||    
T  30779496 gaagcaattatgttgggctaccggttaatgggctgggatttatgcagg 30779449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 18924243 - 18924311
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggat 107  Q
    ||||| || ||| ||||||||||||||||||  |||||||||||| ||||||||| | | |||||||||    
T  18924243 ggggtgtaggaaacaattatgttggactaccggttaatgggctggaatttatgcacggtgcataaggat 18924311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 14499330 - 14499287
Alignment:
Q  16 gggggtatatgacaaaatgggttggggtatacgaagcaattatg 59  Q
    |||||| ||||||||||||||||||||| || ||||||||||||    
T  14499330 gggggtgtatgacaaaatgggttggggtgtaggaagcaattatg 14499287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 37002391 - 37002332
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  37002391 atcctctccatttataaatttctccatttgttccatttagagagataaagacacataaaa 37002332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 56269217 - 56269158
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  56269217 atcctctccatttataaatttctccatttgttccatttagagagataaagacacataaaa 56269158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 3326435 - 3326488
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataa 302  Q
    |||| ||||||||||||||||||  | ||||||||||| ||||| |||||||||    
T  3326435 gttaagatcctctccatttatgtcctcctccatttctttaattttgagagataa 3326488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 34075816 - 34075783
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctc 278  Q
    ||||||||||||||||||||||||| ||||||||    
T  34075816 atgggttaggatcctctccatttatatgtttctc 34075783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 23119535 - 23119487
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataa 302  Q
    |||| |||||||||||  || ||||||||||||| ||||||||||||||    
T  23119535 gatcatctccatttattagtctctccatttcttccatttggagagataa 23119487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 26428574 - 26428614
Alignment:
Q  261 tccatttatgtgtttctccatttcttcaatttggagagata 301  Q
    |||||||||||  |||||||||||| |||||||||||||||    
T  26428574 tccatttatgtccttctccatttctacaatttggagagata 26428614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 36621054 - 36621018
Alignment:
Q  52 caattatgttggactaccaattaatgggctgggattt 88  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  36621054 caattatgttggactaccgattaatgggcttggattt 36621018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6630 - 6503
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||  |||||||||||||||||||||||  | ||    
T  6630 attgtggtttcgcttgggggtgtatgacaaaatgggttggtgtatacgaagaaattatgttggactaccggttaatgggctgggatttatgcagtgtgca 6531  T
Q  101 taaggatgtcttatgcatgataaccgca 128  Q
    |||||||| |||||||||||||||||||    
T  6530 taaggatgccttatgcatgataaccgca 6503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 45402306 - 45402176
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||| ||||||||||||||| | ||    
T  45402306 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgggctaccggttaatgggttgggatttatgcagggtgca 45402207  T
Q  101 taaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||| ||||||    
T  45402206 taaggatgccttatgcatgataactgcaccc 45402176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 354
Target Start/End: Original strand, 21151065 - 21151175
Alignment:
Q  243 gaatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaat 342  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||    
T  21151065 gaatgggttaggattctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaat 21151163  T
Q  343 gatggtgggacc 354  Q
    ||||||||||||    
T  21151164 gatggtgggacc 21151175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21405476 - 21405349
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    |||||||||| ||||| |||| ||||||||||||||||||| | ||||||||||||||||||| |||||  ||||||| ||| |||||||||||| | ||    
T  21405476 attgtggttttgcttgagggtgtatgacaaaatgggttgggatgtacgaagcaattatgttgggctaccggttaatggactgtgatttatgcagggtgca 21405377  T
Q  101 taaggatgtcttatgcatgataaccgca 128  Q
    |||||||| || ||||||||||||||||    
T  21405376 taaggatgcctcatgcatgataaccgca 21405349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 12139243 - 12139349
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatga 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||        ||||||||||||||||||    
T  12139243 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataa--acacataaaatctt-aaaaaaagtaaaatataattaatga 12139339  T
Q  345 tggtgggacc 354  Q
    ||||||||||    
T  12139340 tggtgggacc 12139349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 47226229 - 47226126
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggt 348  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||        ||||||||||||||||||||||    
T  47226229 gttaggatcctctccatttatgtgtttctctatttcttcaatttggagagataa-aacacataaaatctt-ggaaaaagtaaaatataattaatgatggt 47226132  T
Q  349 gggacc 354  Q
    ||||||    
T  47226131 gggacc 47226126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6796822 - 6796728
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcagg 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||   |||  ||||||||||| ||||||||||||    
T  6796822 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacgaatcaattatgttgggtcaccggttaatgggctgagatttatgcagg 6796728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 7362497 - 7362587
Alignment:
Q  259 tctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgg 350  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||    
T  7362497 tctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatggtgg 7362587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 353
Target Start/End: Original strand, 16366438 - 16366540
Alignment:
Q  250 ttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtg 349  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||        |||||||||||||||||||||||    
T  16366438 ttaggatcatctccatttatgtgtttctccatttcttcaatttggagagataaaaacacgtaaaatctt-gaaaaaagtaaaatataattaatgatggtg 16366536  T
Q  350 ggac 353  Q
    ||||    
T  16366537 ggac 16366540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 45260586 - 45260481
Alignment:
Q  247 gggttaggat-cctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||    
T  45260586 gggttaggattcctctctatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-aaaaaaagtaaaatataattaatgat 45260488  T
Q  346 ggtggga 352  Q
    | |||||    
T  45260487 gatggga 45260481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 4888391 - 4888491
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||    
T  4888391 gatcctcttcatttatgtgtttctcaatttcttccatttggagagataaagacacataaaatcttaaaaaaca-taaaatataattaatgatggtgggac 4888489  T
Q  354 ct 355  Q
    ||    
T  4888490 ct 4888491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 25084887 - 25084780
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||| ||         ||||||||||||||||||    
T  25084887 tgggttatgatcctctccatttatgtgtttctccatttttttaatttgaagagataaagacacataaaat-tttgaaaaaaataaaatataattaatgat 25084789  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  25084788 ggtgggacc 25084780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 27334759 - 27334667
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||| | |||||| ||  |||| |||||||||||||||||    
T  27334759 ggggtgtacgaagcaattatgttgggctaccgattaatgggctgggacttatgcagggtgcataagaattccttaagcatgataaccgcaccc 27334667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 353
Target Start/End: Original strand, 18198180 - 18198278
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||         ||||||||||||||||||||||||||    
T  18198180 gatcctctccatttatgtgtttctccatttcttcaatttgtagagataaaatcacataaaatcttgaaaaaaa-taaaatataattaatgatggtgggac 18198278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 44647881 - 44647983
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||        |||||||||||||||||||    
T  44647881 tgggttatgatcctctccatttatgtgtttctccatttcttcaattt---gagataaagacacataaaatctt-gaaaaatgtaaaatataattaatgat 44647976  T
Q  346 ggtggga 352  Q
    || ||||    
T  44647977 ggaggga 44647983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 258 - 354
Target Start/End: Complemental strand, 9559201 - 9559106
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggacc 354  Q
    |||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||         |||||||||||||||||||||||||||    
T  9559201 ctctccatttatatgtttctcgatttcttccatttggagagataaagacacataaaatcttgaaaaaaa-taaaatataattaatgatggtgggacc 9559106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 5758276 - 5758359
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccc 131  Q
    |||||||||||||||| ||||   ||||||||||||||||||| || ||| ||||||||| | ||||||||||||||||||||||    
T  5758276 gaagcaattatgttgggctacgg-ttaatgggctgggatttatccacgatgcataaggatttccttatgcatgataaccgcaccc 5758359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 34876319 - 34876379
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccct 132  Q
    |||||||||||||| ||||||||| | |||||||||  |||||||||||||||||||||||    
T  34876319 ttaatgggctgggaattatgcagggtgcataaggattgcttatgcatgataaccgcaccct 34876379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 32090001 - 32089942
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||||||||||| | |||||||||  ||||||||| ||||||||||||    
T  32090001 ttaatgggctgggatttatgcagggtgcataaggattccttatgcataataaccgcaccc 32089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 29630967 - 29631033
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||| ||||||||||||| |||| ||||||||||||||  ||||||||| |||| ||||||||||||    
T  29630967 gttaagatcctctccattcatgtctttctccatttctttcatttggagatataaagacacataaaat 29631033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 16932568 - 16932648
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgca 128  Q
    |||||||||||||||| |||||  |||||||| || || ||||||||  | |||||||||  |||||||||||||||||||    
T  16932568 gaagcaattatgttgggctaccggttaatgggttgagacttatgcagagtgcataaggattccttatgcatgataaccgca 16932648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 16937951 - 16938031
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgca 128  Q
    |||||||||||||||| |||||  |||||||| || || ||||||||  | |||||||||  |||||||||||||||||||    
T  16937951 gaagcaattatgttgggctaccggttaatgggttgagacttatgcagagtgcataaggattccttatgcatgataaccgca 16938031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 32915883 - 32915943
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    ||||||| ||||||||||  |||||||||||||| |||||||||||||| |||||| ||||    
T  32915883 gatcctccccatttatgttcttctccatttcttccatttggagagataaagacacaaaaaa 32915943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 39006914 - 39006822
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||| ||| ||||||||||||| | ||| |  |||||| |||||||| |||||||| | |||||||||  ||||||||| ||||||||||||    
T  39006914 ggggtgtacaaagcaattatgttaggctatcggttaatgagctgggatctatgcagggtgcataaggattccttatgcataataaccgcaccc 39006822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 44140133 - 44140050
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||| |||||  ||||||| |||||| |  |||||| | |||||||||  |||||||||||||||| |||||    
T  44140133 gaagcaattatgttgggctaccggttaatggactgggactgttgcagggtgcataaggattccttatgcatgataaccacaccc 44140050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 46345923 - 46345840
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||| |||||  |||||  |||| || ||||||||  | ||||||||| ||||||| |||||||||||||||    
T  46345923 gaagcaattatgttgggctaccggttaataagctgagacttatgcagcgtgcataaggatttcttatgtatgataaccgcaccc 46345840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 34986095 - 34986049
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagata 301  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||||    
T  34986095 atcctctccatttatgtctttctccatttctaccatttggagagata 34986049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 6882214 - 6882149
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||| ||||||   ||||||||||| ||| ||||| |||||||| |||||||||||    
T  6882214 gttaggatcctctcaatttataactttctccatttgttccatttgaagagataaagacacataaaa 6882149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 12286680 - 12286727
Alignment:
Q  12 gcttgggggtatatgacaaaatgggttggggtatacgaagcaattatg 59  Q
    |||||||||| ||||| | ||||||||||||| |||||||||||||||    
T  12286680 gcttgggggtgtatgagagaatgggttggggtgtacgaagcaattatg 12286727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 32916098 - 32916151
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataa 302  Q
    ||||| |||||||||||||||   ||||||||||||||| |||| |||||||||    
T  32916098 gttagaatcctctccatttataactttctccatttcttccattttgagagataa 32916151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 32091524 - 32091604
Alignment:
Q  52 caattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtc-ttatgcatgataaccgcaccc 131  Q
    |||||||||| ||||||| |||||| ||| | |||||||||| | | ||| || || || |||||||||||||||||||||    
T  32091524 caattatgttagactaccgattaattggcggagatttatgcacggtgcatgagaatttccttatgcatgataaccgcaccc 32091604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 47500433 - 47500373
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||||||||||||||||  |||||||||||| | |||| ||||||||  |||||| |||||    
T  47500433 atcctctccatttatgtccttctccatttctaccatttagagagatatagacacacaaaat 47500373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 119833 - 119962
Alignment:
Q  2 ttgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacat 101  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||  | |||    
T  119833 ttgtggttccgcttgggggtgtatgacaaaatgggttggggtgtacaaagcaattatgttgggctaccagttaatgggctgggatttatgcagagtgcat 119932  T
Q  102 aaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||| ||||||||||||||||||||||    
T  119933 aaggatgccttatgcatgataaccgcaccc 119962  T

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Target: scaffold0012; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 207977 - 208086
Alignment:
Q  244 aatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||    
T  207977 aatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-aaaaaaagtaaaatataattaatg 208075  T
Q  344 atggtgggacc 354  Q
    ||| |||||||    
T  208076 atgatgggacc 208086  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 24024079 - 24023949
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||| |||||||||||| | ||    
T  24024079 attgtggtttcgcttggggatgtatgacaaaatgggttggggtgtaagaagcaattatgttgggctaccagttaatgggctgtgatttatgcagggtgca 24023980  T
Q  101 taaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||| ||||||    
T  24023979 taaggatgccttatgcatgataactgcaccc 24023949  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 28564815 - 28564915
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||    
T  28564815 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttttaaaaaagtaaaatataattaatgatggtgggac 28564914  T
Q  354 c 354  Q
    |    
T  28564915 c 28564915  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 35316742 - 35316848
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||        ||||||||||||||||||||    
T  35316742 gggttaggatcctctccatttacgtgtttctccatttcttcaatttggagagataaagacatataaaatctt-gaaaaaagtaaaatataattaatgatg 35316840  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  35316841 gtgggacc 35316848  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 39465699 - 39465798
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||        |||||||||||||||||||||||||||    
T  39465699 gatcctctccatttatgtgtttctccattttttcaatttggagagataaaaacacataaaatctt-gaaaaaagtaaaatataattaatgatggtgggac 39465797  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 13238605 - 13238704
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||    
T  13238605 gatcctctccatttatgcgtttctcaatttcttcaatttggagagataaagacacataaaatcttgaaaaaaa-taaaatataattaatgatggtgggac 13238703  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 41983497 - 41983431
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaa 313  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  41983497 gggttaagatcctctccatttatgtgtttctccatttctttaatttggagagataaagacacataaa 41983431  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 10877619 - 10877686
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  10877619 gggttaggatcctcttcatttatgtgtttctccatttcttcaatttggagagataa-aacacataaaat 10877686  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 36635834 - 36635745
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtc-ttatgcatgataaccgcaccctttac 136  Q
    |||||||||||||||| |||||  ||||||||||| |||||||||| | | ||||||||| || ||||||||||||||| ||||||||||    
T  36635834 gaagcaattatgttgggctaccggttaatgggctgagatttatgcacggtgcataaggatttctttatgcatgataaccacaccctttac 36635745  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 43823831 - 43823923
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcacc 130  Q
    ||||| || ||||||||| ||||||||||||   ||||||||||||||||||||| | | ||||||||| | |||||||||||||||||||||    
T  43823831 ggggtgtaggaagcaattgtgttggactaccggataatgggctgggatttatgcacggtgcataaggatttccttatgcatgataaccgcacc 43823923  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 37072713 - 37072772
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccct 132  Q
    ||||||||||||||||||||||| | |||||||||  |||||||||||||||||||||||    
T  37072713 taatgggctgggatttatgcagggtgcataaggattccttatgcatgataaccgcaccct 37072772  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 39548522 - 39548581
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||||||||||| | |||||||||  ||||||||||||||||||||||    
T  39548522 ttaatgggctgggatttatgcagggtgcataaggattccttatgcatgataaccgcaccc 39548581  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 45625216 - 45625149
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||||||     ||||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  45625216 gggttaggatcctctc----aatgtgtttctccatttcttcaatttagagagataaagacacgtaaaatctt 45625149  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 2061296 - 2061365
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||| ||||||||||||||||  || |||| |||||||| |||||||||||||| ||| |||||||||||    
T  2061296 gttaagatcctctccatttattagtatctcaatttcttccatttggagagataaagacgcataaaatctt 2061365  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 374585 - 374525
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||||||||| ||||||  |||| |||||||||  ||||||||||||||    
T  374585 ctctccatttatgtgtttctccctttctttcatttagagagataaaaacacataaaatctt 374525  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 23259645 - 23259541
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||| ||| ||| |||||||  |||||| |||||||||||||| ||| ||||| |||| ||||||||||        ||||||||||||||||||||    
T  23259645 gggttagaatcatcttcatttatacgtttcttcatttcttcaattttgagggataaagacatataaaatctt-aaaaaaagtaaaatataattaatgatg 23259547  T
Q  347 gtggga 352  Q
    ||||||    
T  23259546 gtggga 23259541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 16141377 - 16141319
Alignment:
Q  71 attaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcac 129  Q
    |||||||| ||| |||||||||||| ||||||| |||  ||||||||||||||||||||    
T  16141377 attaatggactgtgatttatgcagggtacataaagattccttatgcatgataaccgcac 16141319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 42075510 - 42075456
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataa 312  Q
    ||||||||||||  |||| ||||||||||| |||||||||||||| |||||||||    
T  42075510 ctctccatttattagtttatccatttcttccatttggagagataaagacacataa 42075456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 673185 - 673222
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttc 284  Q
    |||||| |||||||||||||||||||||||||||||||    
T  673185 gggttaagatcctctccatttatgtgtttctccatttc 673222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 12949389 - 12949458
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||| |||| ||||||| ||||| ||||||| ||||| | |||||||||||||| || ||||||||||||    
T  12949389 gttaagatcttctccatctatgtctttctccgtttctcctatttggagagataaagatacataaaatctt 12949458  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 28478217 - 28478293
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataacc 125  Q
    |||||||||||||||| |||||| |||||||| | ||| ||||||||| | ||||| |||  ||||||||||||||||    
T  28478217 gaagcaattatgttgggctaccagttaatggg-ttggacttatgcagggtgcataaagattccttatgcatgataacc 28478293  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 8988791 - 8988850
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  8988791 atcctctccatttataaatttctccatttgttccatttagagagataaagacacataaaa 8988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 29188588 - 29188647
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  29188588 atcctctccatttataaatttctccatttgttccatttagagagataaagacacataaaa 29188647  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 20710747 - 20710792
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgca 93  Q
    ||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  20710747 gaagcaattatgttgaactaccggttaatgggctgagatttatgca 20710792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 25996058 - 25996138
Alignment:
Q  52 caattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccc 131  Q
    |||||||||||| |||||  |||||||| ||| ||||||||| | | | |||| || | ||||||||||||||||||||||    
T  25996058 caattatgttgggctaccggttaatgggttggaatttatgcacggtgcttaagaatttccttatgcatgataaccgcaccc 25996138  T

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Target: scaffold0074 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 35885 - 35759
Alignment:
Q  5 tggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataag 104  Q
    ||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| |||||| |||||| |||| |||||||||| | | ||||||    
T  35885 tggtttcgcttgggggtgtatgacaaaatgggttggggtgaacgaagcaattatgttgggctaccagttaatgagctgagatttatgcaaggtgcataag 35786  T
Q  105 gatgtcttatgcatgataaccgcaccc 131  Q
    |||| ||||||||||||||||||||||    
T  35785 gatgccttatgcatgataaccgcaccc 35759  T

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Target: scaffold0006 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 209956 - 210086
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| | |||  |||||||| ||||||||||||||  | ||    
T  209956 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacaaagcaattatgttgggcaaccggttaatgggttgggatttatgcagagtgca 210055  T
Q  101 taaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||||||||||    
T  210056 taaggatgccttatgcatgataaccgcaccc 210086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 73999 - 73927
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  73999 tgggtcaggatgctctccatttatgtgtttctccatttcttcaatttagagagataaaaacacataaaatctt 73927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 20481449 - 20481575
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||| ||||||||||||||| | ||    
T  20481449 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgggctaccggttaatgggttgggatttatgcagggtgca 20481548  T
Q  101 taaggatgtcttatgcatgataaccgc 127  Q
    ||| |||| ||||| ||||||||||||    
T  20481549 taatgatgccttattcatgataaccgc 20481575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 12381068 - 12380963
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||    
T  12381068 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 12380970  T
Q  347 gtgggac 353  Q
    |||||||    
T  12380969 gtgggac 12380963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 12385135 - 12385030
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||    
T  12385135 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 12385037  T
Q  347 gtgggac 353  Q
    |||||||    
T  12385036 gtgggac 12385030  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 45977939 - 45978010
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45977939 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatctt 45978010  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 7841872 - 7841763
Alignment:
Q  243 gaatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaat 342  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||    
T  7841872 gaatgggttaggattctctccatttatatgtttttccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaat 7841774  T
Q  343 gatggtgggac 353  Q
    |||||||||||    
T  7841773 gatggtgggac 7841763  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 12151681 - 12151790
Alignment:
Q  244 aatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatg 343  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||    
T  12151681 aatgggttaagatcctccccatttatgtgtttctccatttattcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatg 12151779  T
Q  344 atggtgggacc 354  Q
    |||||||||||    
T  12151780 atggtgggacc 12151790  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 50484303 - 50484409
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||        |||||||||||||||||| |    
T  50484303 gggttaagatcctctccatttatgtgtttctccatttctttaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgacg 50484401  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  50484402 gtgggacc 50484409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13591103 - 13591165
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttgg 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  13591103 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgg 13591165  T

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Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 16117003 - 16117096
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccc 131  Q
    ||||| || ||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||||  | ||||||||||||||||||||||    
T  16117003 ggggtgtaggaagcaattatgttggactaccggttaatgggcagggatttatgcacgatacataaggaaatccttatgcatgataaccgcaccc 16117096  T

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Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 23862114 - 23862009
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||| ||||||| |||| ||||||||||| |||||||||||||||| |||||| |||||||||||||||         |||||||||||||||||||    
T  23862114 gggttagaatcctcttcattcatgtgtttctctatttcttcaatttggaaagataaagacacataaaatcttgaaaaaaaataaaatataattaatgatg 23862015  T
Q  347 gtggga 352  Q
    ||||||    
T  23862014 gtggga 23862009  T

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Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 30788883 - 30788941
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  30788883 taatgggctgggatttatgcaggatacataaggattccttatgcatgataaccgcaccc 30788941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 350
Target Start/End: Original strand, 40328192 - 40328297
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagat-aaggacacataaaatcttnnnnnnnngtaaaatataattaatga 344  Q
    ||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||        ||||||||||| ||||||    
T  40328192 tgggttaagatcctcttcatttatgtgtttcttcatttctttaatttggagagataaaagacacataaaatcttgaaaaaaagtaaaatataactaatga 40328291  T
Q  345 tggtgg 350  Q
    ||||||    
T  40328292 tggtgg 40328297  T

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Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 50294211 - 50294150
Alignment:
Q  257 cctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  50294211 cctctccatttacgtgtttctcaatttcttccatttggagagataaagacacataaaatctt 50294150  T

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Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 48327312 - 48327209
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| |||||||||||||||||||||| || |||||||| ||||||||| |||| |  ||||||||||||         |||||||||||||||||||    
T  48327312 gggttaagatcctctccatttatgtgtttatcaatttcttccatttggagatataaaggtacataaaatcttgaaaaaaaataaaatataattaatgatg 48327213  T
Q  347 gtgg 350  Q
    ||||    
T  48327212 gtgg 48327209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 2845189 - 2845290
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttct-tcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtggga 352  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||  ||||| ||||| ||        ||||||||||||||||||||||||||    
T  2845189 gatcctctccatttatgtttttctctatttctatcaatttggagagataaatacacacaaaat-tttgaaaatagtaaaatataattaatgatggtggga 2845287  T
Q  353 cct 355  Q
    |||    
T  2845288 cct 2845290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 37643096 - 37643179
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||| ||| || |||||| |||||||| |||||| | | ||||| |||  ||||||||||||||||||||||    
T  37643096 gaagcaattatgttgggctatcagttaatgagctgggatgtatgcacggtgcataaagattccttatgcatgataaccgcaccc 37643179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 44261182 - 44261240
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||| ||||||||||||||||| | |||||||||  ||||||||||||||||||||||    
T  44261182 taatgagctgggatttatgcagggtgcataaggattccttatgcatgataaccgcaccc 44261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 35977881 - 35977930
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttgg 294  Q
    ||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  35977881 atgggttaggatcctctccatttatgtgtttattcatttctttaatttgg 35977930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 19216661 - 19216717
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcac 129  Q
    ||||||||||||| ||||||||| | |||||||||  ||||||||||||||||||||    
T  19216661 taatgggctgggacttatgcagggtgcataaggattccttatgcatgataaccgcac 19216717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 31528960 - 31528901
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||||||| |||||||||||| | |||||||||   |||||||||||||||||||||    
T  31528960 ttaatgggctgagatttatgcagggtgcataaggattctttatgcatgataaccgcaccc 31528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 2741604 - 2741657
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataacc 125  Q
    |||||||||||||||||||||||| | |||||||||   |||||||||||||||    
T  2741604 ttaatgggctgggatttatgcagggtgcataaggattctttatgcatgataacc 2741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 30210866 - 30210801
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||||||||||  | |||||||| ||| |||| ||||||||| |||||| ||||    
T  30210866 gttaggatcctctccatttatgttgtcctccatttattctatttagagagataaagacacaaaaaa 30210801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 20372858 - 20372917
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||||||||| | | ||||| |||| ||||| |||||| |||||||||    
T  20372858 ttaatgggctgggatttatgcatgttgcataatgatgccttattcatgattaccgcaccc 20372917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 32361417 - 32361374
Alignment:
Q  248 ggttaggatcctctccatttatgtgtttctccatttcttcaatt 291  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  32361417 ggttaggatcctctccatttatacatttctccatttcttcaatt 32361374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 33097906 - 33097965
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| ||||||||||||||| | |||||||||  |||| ||||||||||| |||||    
T  33097906 ttaatgggttgggatttatgcagggtgcataaggattccttaagcatgataaccacaccc 33097965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 23319103 - 23319049
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgca 93  Q
    ||||| || |||||||||||||||| |||||  ||||||||||| ||||||||||    
T  23319103 ggggtgtaggaagcaattatgttgggctaccggttaatgggctgagatttatgca 23319049  T

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Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 45890559 - 45890617
Alignment:
Q  49 aagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggat 107  Q
    ||||||||||||||| |||||  |||||||||||| ||||||||| | | |||||||||    
T  45890559 aagcaattatgttgggctaccggttaatgggctggaatttatgcacggtgcataaggat 45890617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 51801013 - 51800959
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccg 126  Q
    |||||||||| ||||||||||||| | |||||||||   ||||||||||||||||    
T  51801013 ttaatgggctaggatttatgcagggtgcataaggattcattatgcatgataaccg 51800959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 1609694 - 1609625
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||| |||||||| ||||||||| |||  |||||||||  |||| ||||| ||| |||||||||||||||    
T  1609694 gttaagatcctcttcatttatgtcttttcccatttctttcatttagagaggtaaagacacataaaatctt 1609625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 40988643 - 40988700
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    ||||||||||||   ||||||||||| ||| |||||||||||||| |||||| |||||    
T  40988643 ctctccatttataactttctccattttttctatttggagagataaagacacacaaaat 40988700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 51420987 - 51421048
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcacccttt 134  Q
    ||||||| || |||||||||||| | ||||| |||  ||||||||||||||||||| |||||    
T  51420987 taatgggttgagatttatgcagggtgcataaagattccttatgcatgataaccgcaaccttt 51421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 2250 - 2373
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggataca 100  Q
    |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||  |||||||| ||||||||||||||| | ||    
T  2250 attgtggttttgtttgggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgggctaccggttaatgggttgggatttatgcagggtgca 2349  T
Q  101 taaggatgtcttatgcatgataac 124  Q
    ||| |||| ||||| |||||||||    
T  2350 taatgatgccttattcatgataac 2373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 30426828 - 30426721
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||    
T  30426828 tgggttaggatcctctccatttatgtgtttttccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgat 30426730  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  30426729 ggtgggacc 30426721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 36991272 - 36991379
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||        || ||||||||||||||||    
T  36991272 tgggttaggatcctcttcatttatgtgtttctccatttcttcaatttggagagataaagacacgtaaaatctt-gaaaaaagtcaaatataattaatgat 36991370  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  36991371 ggtgggacc 36991379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 350
Target Start/End: Original strand, 41511179 - 41511281
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||        ||||||||||||||||||||    
T  41511179 gggttaggatcctctccatttatgtgtttttccatttcttcaatttggagagataaaaacacataaaatctt-gaaaaaagtaaaatataattaatgatg 41511277  T
Q  347 gtgg 350  Q
    ||||    
T  41511278 gtgg 41511281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 5033019 - 5033091
Alignment:
Q  243 gaatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  5033019 gaatgggttaagatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaat 5033091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 10652777 - 10652669
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngt-aaaatataattaatga 344  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||        || ||||||||||||||||    
T  10652777 tgggttaagatcctctccatttatgtgtttcttcatttcttcaatttggagagataa-aacacataaaattttgaaaaaaagtaaaaatataattaatga 10652679  T
Q  345 tggtgggacc 354  Q
    ||||||||||    
T  10652678 tggtgggacc 10652669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 28069643 - 28069742
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    |||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||         ||||||||||||||||||||||||||    
T  28069643 gatcctctccatttatgtgtttttcaatttcttccatttggagagataaagacacataaaatcttgaaaaaaa-taaaatataattaatgatggtgggac 28069741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 12177722 - 12177651
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||  |||||||||    
T  12177722 gggttaggatcctctctatttatgtgtttctccatttcttcaatttaaagagataaggacaattaaaatctt 12177651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 12422150 - 12422079
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||  |||||||||    
T  12422150 gggttaggatcctctctatttatgtgtttctccatttcttcaatttaaagagataaggacaattaaaatctt 12422079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 28319060 - 28318954
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||||| || |||||||||||| ||        ||||||||||||||||||||    
T  28319060 gggttaggattttctccatttacgtgtttctccatttcttcaatttggagagacaaagacacataaaat-tttaaaaaaagtaaaatataattaatgatg 28318962  T
Q  347 gtgggacc 354  Q
    || |||||    
T  28318961 gttggacc 28318954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 10672671 - 10672565
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||  | ||||||||| ||        |||||||||||||||||||    
T  10672671 tgggttagtatcctcttcatttatgtgtttcttcatttattcaatttggagagataaaaatacataaaat-tttaaaaagggtaaaatataattaatgat 10672573  T
Q  346 ggtgggac 353  Q
    ||||||||    
T  10672572 ggtgggac 10672565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 2523607 - 2523665
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  2523607 taatggggtgggatttatgcaggatgcataaggattccttatgcatgataaccgcaccc 2523665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 40695404 - 40695334
Alignment:
Q  248 ggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||| | |||||||| ||| |||||||||||||||||||| ||||| || ||||||||||||    
T  40695404 ggttaggatcctccctatttatgtatttatccatttcttcaatttggagggataaagaaacataaaatctt 40695334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 24101939 - 24102004
Alignment:
Q  253 ggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||||||||||||| || |||| || ||||||||||||||| ||||| |||||||||    
T  24101939 ggatcctctccatttatgtgtttttctatttttttaatttggagagataaagacacgtaaaatctt 24102004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 40246592 - 40246534
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||| |||||||||||||||| | |||||||||  ||||||||||||||||||||||    
T  40246592 taatggactgggatttatgcagggtgcataaggattccttatgcatgataaccgcaccc 40246534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 24473043 - 24472987
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcagg 95  Q
    ||||| || ||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24473043 ggggtgtaggaagcaattatgttggactaccggttaatgggctgagatttatgcagg 24472987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 44859325 - 44859219
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||||| |||||||||| |||||| ||| |||||| ||||||||||||||| ||||| | |||| ||         ||||||||||||||||||    
T  44859325 tgggttaggatc-tctccatttacgtgtttttccttttctttaatttggagagataaagacacgtgaaat-tttttaaaaaataaaatataattaatgat 44859228  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  44859227 ggtgggacc 44859219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 30652493 - 30652555
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcacccttt 134  Q
    ||||||||||| |||||||||||| | |||||| ||  |||||||||||||||| ||||||||    
T  30652493 ttaatgggctgagatttatgcagggtgcataagaattccttatgcatgataaccacacccttt 30652555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 45409570 - 45409512
Alignment:
Q  37 ttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcagg 95  Q
    ||||||| || |||||||||||||||  |||||| ||||||| ||||||||||||||||    
T  45409570 ttggggtgtaggaagcaattatgttgcgctaccagttaatggactgggatttatgcagg 45409512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 8412179 - 8412239
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    ||||||||||||||||| ||||| ||||| ||| |||| |||||||||  |||||||||||    
T  8412179 atcctctccatttatgtttttcttcattttttccatttagagagataaatacacataaaat 8412239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 28698090 - 28698031
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| || |||||||||| | | |||||||||  ||||||||||||||||||||||    
T  28698090 ttaatgggttgtgatttatgcatggtgcataaggattccttatgcatgataaccgcaccc 28698031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 12356188 - 12356246
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||||||||||||||||||| | |||||||||  |||||  ||||| |||||||||    
T  12356188 taatgggctgggatttatgcagggtgcataaggattccttatttatgatgaccgcaccc 12356246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 37966583 - 37966533
Alignment:
Q  264 atttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||| ||||||||||||||  |||||||||||||| || ||||||||    
T  37966583 atttatgtctttctccatttcttttatttggagagataaagatacataaaa 37966533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 27490162 - 27490093
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||| |||| ||||||||||||| |||||| |||||||| ||||| ||||| ||  | ||||||||||||    
T  27490162 gttaagatcttctccatttatgtctttctcaatttcttccatttgaagagacaaaaatacataaaatctt 27490093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 39143443 - 39143492
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagag 298  Q
    ||||||||||||| |||| |||| ||||||||||||||  ||||||||||    
T  39143443 gttaggatcctcttcattaatgtttttctccatttcttttatttggagag 39143492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 1672743 - 1672795
Alignment:
Q  55 ttatgttggactaccaattaatgggctgggatttatgcaggatacataaggat 107  Q
    ||||||||| |||||  |||||||||||||||||||||| | | |||||||||    
T  1672743 ttatgttgggctaccggttaatgggctgggatttatgcacggtgcataaggat 1672795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 28403300 - 28403232
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    ||||||||||||||| |||||||   ||||| ||||| ||| |||| |||||||||||| ||| |||||    
T  28403300 gggttaggatcctcttcatttataattttcttcatttgttccatttagagagataaggatacacaaaat 28403232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 29698079 - 29698186
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||        |||||||||||||||||||    
T  29698079 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagaaataaagacacataaaatctt-gaaaaaagtaaaatataattaatgat 29698177  T
Q  346 ggtgggacc 354  Q
    |||||||||    
T  29698178 ggtgggacc 29698186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 4804365 - 4804471
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||        ||||||||||||||||||||    
T  4804365 gggttaggatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgatg 4804463  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  4804464 gtgggacc 4804471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 1249304 - 1249198
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||        ||||||||||||||||||||    
T  1249304 gggttaagatcctctccatttatgtgtttctccatttcttcaatttggaaagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 1249206  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  1249205 gtgggacc 1249198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 7162001 - 7162107
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||    
T  7162001 gggttaggatcctctctatttacgtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 7162099  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  7162100 gtgggacc 7162107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 32557105 - 32557218
Alignment:
Q  17 ggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgc 116  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||| ||| |||||||||||| | |||||||||  |||||||    
T  32557105 ggggtgtatgacaaaatgggttggggtgtacgaagcaattatgttgggctaccggttaatggactgagatttatgcagggtgcataaggataccttatgc 32557204  T
Q  117 atgataaccgcacc 130  Q
    ||||||||| ||||    
T  32557205 atgataaccacacc 32557218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 350
Target Start/End: Original strand, 32737790 - 32737893
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgat 345  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||        |||||||||||||||||||    
T  32737790 tgggttaggatcctctccatttatatgtttctccatttcttcaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgat 32737888  T
Q  346 ggtgg 350  Q
    |||||    
T  32737889 ggtgg 32737893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 21159523 - 21159421
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||||||||| |||||||||    |||||||||||||||||||| |||| |||||||||||||||        ||||||||||||||||||||    
T  21159523 gggttaggatcctctccgtttatgtgt----ccatttcttcaatttggagatataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatg 21159429  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  21159428 gtgggacc 21159421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 17944102 - 17944185
Alignment:
Q  270 gtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggacc 354  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||        ||||||||||||||||||||||||||||    
T  17944102 gtgtttctccatttcttcaatttggagagataaaaacacataaaatctt-ggaaaaagtaaaatataattaatgatggtgggacc 17944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 27826462 - 27826522
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||    
T  27826462 gatcctctccatttatgtgtttctcaatttcttccattttgagagataaagacacataaaa 27826522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 4102043 - 4101999
Alignment:
Q  49 aagcaattatgttggactaccaattaatgggctgggatttatgca 93  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  4102043 aagcaattatgttggactaccgattaatgggctgggatttatgca 4101999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 18612318 - 18612411
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccc 131  Q
    ||||| || ||| |||||||||||| |||| | |||||||| ||||||||||| | | | ||||||||| | ||||||||||||||||||||||    
T  18612318 ggggtgtaggaaacaattatgttgggctacaagttaatgggttgggatttatgtacggtgcataaggatttccttatgcatgataaccgcaccc 18612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 29163674 - 29163766
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtc-ttatgcatgataaccgcaccc 131  Q
    |||||||| |||||||||||||||| |||||  |||||||||||  ||||||||| | | |||||| || || |||||||||||||||||||||    
T  29163674 ggggtataggaagcaattatgttgg-ctaccggttaatgggctgaaatttatgcacggtgcataagaatttccttatgcatgataaccgcaccc 29163766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 16967521 - 16967462
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||| || |||||||||||||| |||| ||||  ||||||||||||||||||||||    
T  16967521 ttaatgggttgagatttatgcaggatgcatagggattccttatgcatgataaccgcaccc 16967462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 227714 - 227668
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagata 301  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||||    
T  227714 atcctcttcatttatgtgcttctccatttctacaatttggagagata 227668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 30460763 - 30460808
Alignment:
Q  273 tttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||    
T  30460763 tttcttcatttcttctatttggagagataaagacacataaaatctt 30460808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 4338126 - 4338070
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcac 129  Q
    ||||||||||| ||||||||||| | |||||||||  ||||||||||||||| ||||    
T  4338126 taatgggctggaatttatgcagggtgcataaggattccttatgcatgataactgcac 4338070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 12412582 - 12412656
Alignment:
Q  275 tctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgg 350  Q
    ||||||||||||||||||||||||||||  | ||||||||| ||        ||||||||||||||||||||||||    
T  12412582 tctccatttcttcaatttggagagataaaaatacataaaat-tttgaaaaaagtaaaatataattaatgatggtgg 12412656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 13089899 - 13089853
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttc-tccatttcttcaattt 292  Q
    ||||||||||||||| |||||||||||||| | ||||||||||||||    
T  13089899 gggttaggatcctcttcatttatgtgtttctttcatttcttcaattt 13089853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 18755741 - 18755699
Alignment:
Q  17 ggggtatatgacaaaatgggttggggtatacgaagcaattatg 59  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||    
T  18755741 ggggtgtatgacataatgggttggggtgtacgaagcaattatg 18755699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 10588760 - 10588705
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcagg 95  Q
    |||||||| |||||||||||||||| |||||  ||||||| ||| ||||||||||||    
T  10588760 ggggtataggaagcaattatgttgggctacc-gttaatggactgagatttatgcagg 10588705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 25119268 - 25119212
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcagg 95  Q
    |||| ||| |||||||||||||||  |||||  ||||||||||| ||||||||||||    
T  25119268 ggggcataggaagcaattatgttgagctaccggttaatgggctgagatttatgcagg 25119212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 43720105 - 43719999
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||    
T  43720105 gggttaggatcttctccatttatgtgtttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaaa-taaaatataattaatgatg 43720007  T
Q  347 gtgggacc 354  Q
    ||||||||    
T  43720006 gtgggacc 43719999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 9639970 - 9639845
Alignment:
Q  5 tggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataag 104  Q
    ||||||| ||||| ||| ||||||||| ||||||||||| ||||||| ||||||||||  |||||  |||||||||||||||||||||||| | ||||||    
T  9639970 tggtttcacttggaggtgtatgacaaa-tgggttggggtgtacgaagtaattatgttgagctaccggttaatgggctgggatttatgcagggtgcataag 9639872  T
Q  105 gatgtcttatgcatgataaccgcaccc 131  Q
    |||| ||||||||||||||| ||||||    
T  9639871 gatgccttatgcatgataactgcaccc 9639845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 19830593 - 19830483
Alignment:
Q  245 atgggttaggatcctctccattt-atgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatg 343  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||    
T  19830593 atgggttaagatcctctccattttatgtgtttttccatttcttcaatttggagagataaagacacataaaatctttaaaaaaggtaaaatataattaatg 19830494  T
Q  344 atggtgggacc 354  Q
    |||||||||||    
T  19830493 atggtgggacc 19830483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 40851689 - 40851761
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  40851689 tgggttaggatcctctccatttatgtatttctccatttcttcaatttggagagataaagacacataaaatctt 40851761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 34373750 - 34373855
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggt 348  Q
    |||||||||||||||||  |||||||||| ||||| |||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||    
T  34373750 gttaggatcctctccatcaatgtgtttcttcattttttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatggt 34373848  T
Q  349 gggacct 355  Q
    |||||||    
T  34373849 gggacct 34373855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 350
Target Start/End: Original strand, 2229900 - 2230002
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||        ||||||||||||||||||||    
T  2229900 gggttaggatcctcttcatttatgtgtttctctatttctttaatttggagagataaagacacataaaat-tttgaaaaaagtaaaatataattaatgatg 2229998  T
Q  347 gtgg 350  Q
    ||||    
T  2229999 gtgg 2230002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 34373731 - 34373637
Alignment:
Q  259 tctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggacc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||        ||||||||||||||||||||||||||||    
T  34373731 tctccatttatgtgtttctccatttcttcaatttggagagataaagagacaaaaaatctt-gaaaaaagtaaaatataattaatgatggtgggacc 34373637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 12402883 - 12402988
Alignment:
Q  247 gggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatg 346  Q
    ||||||||||| ||||||||||||||||||| |||||  | ||||||||||||||| |||||||||||||||        |||||||||||||||| |||    
T  12402883 gggttaggatc-tctccatttatgtgtttcttcattttcttaatttggagagataaagacacataaaatcttaaaaaaaagtaaaatataattaataatg 12402981  T
Q  347 gtgggac 353  Q
    |||||||    
T  12402982 gtgggac 12402988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 27033591 - 27033672
Alignment:
Q  270 gtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtggga 352  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||    
T  27033591 gtgtttctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatggtggga 27033672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32233608 - 32233664
Alignment:
Q  1 attgtggtttcgcttgggggtatatgacaaaatgggttggggtatacgaagcaatta 57  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  32233608 attgtggtttcgcttgggggtgtatgacaaaatgggttggggtgtacgaagcaatta 32233664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 550972 - 550906
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||||    
T  550972 gttaagatcctctccatttatgtctttctccatttcttccatttggagagataaagatacataaaat 550906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 23700059 - 23700152
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccct 132  Q
    ||||| || |||||||||||||||| ||||   ||||||||||||||||||| || ||| ||||||||| | |||||||||||||||||||||||    
T  23700059 ggggtgtaggaagcaattatgttgggctacgg-ttaatgggctgggatttatccacgatgcataaggatttccttatgcatgataaccgcaccct 23700152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 23718514 - 23718607
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccct 132  Q
    ||||| || |||||||||||||||| ||||   ||||||||||||||||||| || ||| ||||||||| | |||||||||||||||||||||||    
T  23718514 ggggtgtaggaagcaattatgttgggctacgg-ttaatgggctgggatttatccacgatgcataaggatttccttatgcatgataaccgcaccct 23718607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 23736970 - 23737063
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgt-cttatgcatgataaccgcaccct 132  Q
    ||||| || |||||||||||||||| ||||   ||||||||||||||||||| || ||| ||||||||| | |||||||||||||||||||||||    
T  23736970 ggggtgtaggaagcaattatgttgggctacgg-ttaatgggctgggatttatccacgatgcataaggatttccttatgcatgataaccgcaccct 23737063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 23756263 - 23756347
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtc-ttatgcatgataaccgcaccct 132  Q
    |||||||||||||||| |||| | ||||||||||||||||||| || | | ||||||||| || ||||||||||||||||||||||    
T  23756263 gaagcaattatgttgggctac-agttaatgggctgggatttatccacggtgcataaggatttccttatgcatgataaccgcaccct 23756347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 46167322 - 46167381
Alignment:
Q  259 tctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||||||    
T  46167322 tctccatttatgtgtttttccatttcttcaatttagagagataaagacaaatataatctt 46167381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 52859528 - 52859433
Alignment:
Q  258 ctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggac 353  Q
    |||| ||||||||| ||||||||||||| | ||||||||| ||||  ||||||||||||||        ||||||||||||||||||| |||||||    
T  52859528 ctcttcatttatgtctttctccatttctaccatttggagaaataaatacacataaaatcttaaaaaagagtaaaatataattaatgattgtgggac 52859433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 32233757 - 32233835
Alignment:
Q  53 aattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    ||||||||||| |||||  ||||||| ||| ||||||| |||  | |||||||||| ||||||||||||||||||||||    
T  32233757 aattatgttgggctaccggttaatggactgagatttatacagagtgcataaggatgccttatgcatgataaccgcaccc 32233835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 16276759 - 16276684
Alignment:
Q  37 ttggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatgcaggatacataaggatgtctt 112  Q
    ||||||| || |||||||||||||||| |||||  |||||||||| ||||||||||| | | ||||||||| ||||    
T  16276759 ttggggtgtaggaagcaattatgttgggctaccggttaatgggcttggatttatgcacggtgcataaggatttctt 16276684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 53595572 - 53595631
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||| ||||||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  53595572 ttaatgagctgggatttatgcagggtgcataaggattccttatgcatgataactgcaccc 53595631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 25506650 - 25506612
Alignment:
Q  250 ttaggatcctctccatttatgtgtttctccatttcttca 288  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25506650 ttaggatcctctccatttatatgtttctccatttcttca 25506612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 39194507 - 39194446
Alignment:
Q  73 taatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcacccttt 134  Q
    |||| |||||| |||||| |||||| |||||| ||  |||||||||||||||||||||||||    
T  39194507 taataggctggaatttattcaggatgcataagaattccttatgcatgataaccgcacccttt 39194446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 3009173 - 3009233
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    ||||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  3009173 gatcctctccatttataaatttctccatttgttccatttagagagataaagacacataaaa 3009233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 47729138 - 47729190
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggatttatg 91  Q
    ||||| || |||||||||||||||| |||||  ||||||||||||||||||||    
T  47729138 ggggtgtaggaagcaattatgttgggctaccggttaatgggctgggatttatg 47729190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 48084744 - 48084804
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||||||||||||||||  |||||||||||| | |||||||||||||  |||||| |||||    
T  48084744 atcctctccatttatgtccttctccatttctaccatttggagagatatagacacacaaaat 48084804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 31523808 - 31523749
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  31523808 atcctctccatttataaatttctccatttgttccatttagagagataaagacacataaaa 31523749  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 42613015 - 42613074
Alignment:
Q  255 atcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||||||||||||||   ||||||||||| ||| |||| ||||||||| |||||||||||    
T  42613015 atcctctccatttataaatttctccatttgttctatttagagagataaagacacataaaa 42613074  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 20485869 - 20485808
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaat 315  Q
    |||||||||||||||  | ||||||||||||| | |||||||||||||   |||||||||||    
T  20485869 gatcctctccatttaaatttttctccatttctaccatttggagagatataaacacataaaat 20485808  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 32577451 - 32577519
Alignment:
Q  249 gttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||| ||||||||     |||||||||||||| |||||||||||||| |||||| ||||||||    
T  32577451 gttaggatcctttccatttaaactcttctccatttcttctatttggagagataaagacaca-aaaatctt 32577519  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 49289102 - 49289042
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaa 314  Q
    |||| ||| ||||||||| ||||||||||| ||  ||||||||| |||| |||||||||||    
T  49289102 gatcatcttcatttatgtttttctccatttgtttcatttggagaaataaagacacataaaa 49289042  T

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Target: scaffold0250 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 7063 - 7135
Alignment:
Q  246 tgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||    
T  7063 tgggttaggatcctctccatttatgtgtttcttcatttcttcaatttgcagagataaagacatataaaatctt 7135  T

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Target: scaffold0035 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 16557 - 16500
Alignment:
Q  245 atgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataa 302  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16557 atgggttaggatcctctcaatttatgtgtttctccatttcttcaatttggagagataa 16500  T

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Target: scaffold0456 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 13641 - 13719
Alignment:
Q  275 tctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatgatggtgggacc 354  Q
    |||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||    
T  13641 tctccatttcttcaatttggagagataaagacacataaaatctt-gaaaaaagtaaaatataattaatgatggtgggacc 13719  T

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Target: scaffold0008 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 9349 - 9285
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||| |||||||    
T  9349 gatcctctccatttatgtgtttctcaatttcttccatttggagagataaaggcacatgaaatctt 9285  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 6588 - 6493
Alignment:
Q  244 aatgggttaggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatcttnnnnnnnngtaaaatataattaatg 343  Q
    ||||||||||||||||||||||||||||||        ||||||||||| ||||||||| |||||||||||||||        |||||||||||||||||    
T  6588 aatgggttaggatcctctccatttatgtgt--------ttcttcaattttgagagataaagacacataaaatctt-ggaaaaagtaaaatataattaatg 6498  T

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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 28631 - 28681
Alignment:
Q  39 ggggtatacgaagcaattatgttggactaccaattaatgggctgggattta 89  Q
    ||||| || |||||||||||||||| |||||||| ||||||||||||||||    
T  28631 ggggtgtaggaagcaattatgttgggctaccaatcaatgggctgggattta 28681  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 22593 - 22529
Alignment:
Q  254 gatcctctccatttatgtgtttctccatttcttcaatttggagagataaggacacataaaatctt 318  Q
    |||| ||||||||||||| | ||||||||||||  |||| |||||||||  ||||||||||||||    
T  22593 gatcttctccatttatgtctatctccatttcttacatttagagagataaatacacataaaatctt 22529  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 20563 - 20520
Alignment:
Q  16 gggggtatatgacaaaatgggttggggtatacgaagcaattatg 59  Q
    |||||| ||||||||||||||||||||| || ||||||||||||    
T  20563 gggggtgtatgacaaaatgggttggggtgtaggaagcaattatg 20520  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 52020 - 52079
Alignment:
Q  72 ttaatgggctgggatttatgcaggatacataaggatgtcttatgcatgataaccgcaccc 131  Q
    |||||||||||||||||||||| | | ||||| |||| ||||| |||||| |||||||||    
T  52020 ttaatgggctgggatttatgcatgttgcataatgatgccttattcatgattaccgcaccc 52079  T

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Target: scaffold1251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 483 - 438
Alignment:
Q  14 ttgggggtatatgacaaaatgggttggggtatacgaagcaattatg 59  Q
    |||||||| ||||||||||||||||||||| || |||| |||||||    
T  483 ttgggggtgtatgacaaaatgggttggggtgtatgaagtaattatg 438  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 14586 - 14631
Alignment:
Q  48 gaagcaattatgttggactaccaattaatgggctgggatttatgca 93  Q
    ||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  14586 gaagcaattatgttgaactaccggttaatgggctgagatttatgca 14631  T

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Target: scaffold0468 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 5531 - 5587
Alignment:
Q  251 taggatcctctccatttatgtgtttctccatttcttcaatttggagagataaggaca 307  Q
    ||||||||||||||||||||    ||| ||||||||| |||||||||||||| ||||    
T  5531 taggatcctctccatttatgatcctcttcatttcttccatttggagagataaagaca 5587  T

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