View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15831_high_2 (Length: 576)
Name: NF15831_high_2
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 281 - 564
Target Start/End: Complemental strand, 8019325 - 8019042
Alignment:
| Q |
281 |
ttggatgtggtcatgtccaaaatgaatttcgtagtcttatggagaagatggactatgatgtacgttactttggcatcaattttggtattagtaaatggta |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8019325 |
ttggatgtggtcatgtccaaaatgaatttcgtagtcttatggagaagatggactatgatgtatgttacttcggcatcaatttcggtattagtaaatggta |
8019226 |
T |
|
| Q |
381 |
atctaaccgatgaatttaaattgagatgaggttgcaccaagacgataatttcttattgnnnnnnnnnnnnattggtgttttgaaggtatgaatgttatgt |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8019225 |
atctaaccgatgaatttaaattgagatgaggttgcagcaagacgatcatttcttattgtttttgttttttatcggtgttttgaaggtatgaatgttatgt |
8019126 |
T |
|
| Q |
481 |
tgaatgcttcagttgaggctgagttgtctatcgagtacaaggttgactcttcattgaagctgcatatttcttgtttgcattttg |
564 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8019125 |
tgaatgtttcagttgaggctgagctgtctatcgagcacaaggttgactcttcattgaagttgcatatttcttgtttgcattttg |
8019042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 8019513 - 8019349
Alignment:
| Q |
123 |
aggttttaactaattgcatatgattatgaaagttgttagtccttaacaattgtatgattttaggctgatatcactggtctggtatatgcacaaagtgttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
8019513 |
aggttttaactaattgcatatgattatgaaagttgttagtccttaacgattgtatgattttaggctaatatcactagtctggcatatgcacaaagtgttg |
8019414 |
T |
|
| Q |
223 |
tcgaaacttgtagcaaccagattgaagttgattgtcgatcgttaaagggaggcaaatattggatg |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8019413 |
tcgaaagttgtagcaaccagattgaagttgattgtcgatcgttaaagggaggcaaatattggatg |
8019349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 12217255 - 12217309
Alignment:
| Q |
75 |
aacttgttccacaaactatccaggtagttagttttaactaactgtaataggtttta |
130 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
12217255 |
aacttgttccacaagttatctag-tagttagttgtaactaactgtaataggtttta |
12217309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University