View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_high_3 (Length: 548)
Name: NF15831_high_3
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 46402563 - 46402908
Alignment:
| Q |
9 |
agatgaacctgataactactagtagatacatgtttagaaaacttacagcatatttcatatcttcataatttgtatactccactatcccagtcatgcctgc |
108 |
Q |
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| T |
46402563 |
agatgaacctgataactactagtagatacatgtttagaaaacttacagcatatttcatatcttcataatttgtatactccactatcccagtcatgcctgc |
46402662 |
T |
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| Q |
109 |
atacaaattgaagagaagtttgagaacaattttgttgtaagaattaaggtaacagataagaatcaaatatatgaaattccagggatgcagaaacatagac |
208 |
Q |
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| T |
46402663 |
atacaaattgaagagaagtttgagaacaattttgttgtaagaattaaggtaacagataagaatcaaatatatgaaattccagggatgcagaaacatagac |
46402762 |
T |
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| Q |
209 |
atccttgatctcaaacttaaaatcccaagtagtgcactgacatcaaaactattatttgaaactatagaaaagaaagcttccatcataagtgctttaggtt |
308 |
Q |
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| T |
46402763 |
atccttgatctcaaacttaaaatcccaagtagtgcactgacatcaaaaccattatttgaaactatagaaaagaaagcttccatcataagtgctttaggtt |
46402862 |
T |
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| Q |
309 |
ggactaattaattgactgttattatgattattttgcccataataga |
354 |
Q |
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| T |
46402863 |
ggactaattaattgactgttattatgattattttgcccataataga |
46402908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 351 - 548
Target Start/End: Original strand, 46403037 - 46403234
Alignment:
| Q |
351 |
tagatactgtgctacttaccacctcggtcacggaaaacttgagagaaatatacatcaccagctctgcgcatgtgatcctaatcaagacagtgacaggaag |
450 |
Q |
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| T |
46403037 |
tagatactgtgctacttaccacctcggtcacggaaaacttgagagaaacatacatcaccagctctgcgcatgtgatcctaatcaagacagtgacaggaag |
46403136 |
T |
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| Q |
451 |
tagttaaccccttatcatgcaaacaaatgtacaactattataagaaaaatgaacaagtcatactttcaggtcttgccatgaagccgaaggaggtaatc |
548 |
Q |
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| T |
46403137 |
tagttaaccctttatcatgcaaacaaatgtacaactattataagaaaaatgaacaagtcatactttcaggtcttgccatgaagccgaaggaggtaatc |
46403234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 37121775 - 37121848
Alignment:
| Q |
44 |
agaaaacttacagcatatttcatatcttcataatttgtatactccactatcccagtcatgcctgcatacaaatt |
117 |
Q |
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| T |
37121775 |
agaatactcacagcatatttcacatcatcataattggtataatccactatcccagtcaagcctgcatacaaatt |
37121848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 37122251 - 37122319
Alignment:
| Q |
364 |
acttaccacctcggtcacggaaaacttgagagaaatatacatcaccagctctgcgcatgtgatcctaat |
432 |
Q |
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| T |
37122251 |
acttacctccacgctcacggaacacttgagaaaaacacacatgaccagctttacgcatgtgatcctaat |
37122319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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