View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_high_47 (Length: 220)
Name: NF15831_high_47
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 35035804 - 35036010
Alignment:
| Q |
1 |
ccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgaca |
100 |
Q |
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| T |
35035804 |
ccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgaca |
35035903 |
T |
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| Q |
101 |
aatacggagccatcttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagc |
200 |
Q |
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| T |
35035904 |
aatacggagccatcttcacagtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagc |
35036003 |
T |
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| Q |
201 |
ctttgct |
207 |
Q |
| |
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||||||| |
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| T |
35036004 |
ctttgct |
35036010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 35019629 - 35019811
Alignment:
| Q |
25 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgc |
124 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||||||||||| | |
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| T |
35019629 |
tggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttc |
35019728 |
T |
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| Q |
125 |
gtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgct |
207 |
Q |
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| T |
35019729 |
gtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgct |
35019811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 35029720 - 35029903
Alignment:
| Q |
25 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccat-cttcaccgtg |
123 |
Q |
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||||| ||||| ||||||||||||||||||||||| ||||||| |||| | | ||||| |||||||||||||||||||||||| |||| ||||||||| |
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| T |
35029720 |
tggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatccttcaccgtt |
35029819 |
T |
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| Q |
124 |
cgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgct |
207 |
Q |
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| T |
35029820 |
cgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtttcaccgtaaatgacaaaacttttgct |
35029903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 35043986 - 35044171
Alignment:
| Q |
22 |
gcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccg |
121 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||| | |||| || ||||||| || || ||||||| ||||||||| | ||||||||| |
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| T |
35043986 |
gcttggcctttgatcggccacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacct |
35044085 |
T |
|
| Q |
122 |
tgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgct |
207 |
Q |
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| T |
35044086 |
ttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagagcctttgct |
35044171 |
T |
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