View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_high_6 (Length: 516)
Name: NF15831_high_6
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 36734183 - 36733674
Alignment:
| Q |
1 |
agatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatcctcgaaataacgttattcg |
100 |
Q |
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| T |
36734183 |
agatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatccttgaaataacgttattcg |
36734084 |
T |
|
| Q |
101 |
acaacttcaaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36734083 |
acaacttcaaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctccttaaagg |
36733984 |
T |
|
| Q |
201 |
aagaagttgactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36733983 |
aagaagttgactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgt |
36733884 |
T |
|
| Q |
301 |
gagccatatgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaag |
400 |
Q |
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| T |
36733883 |
gagccatatgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaag |
36733784 |
T |
|
| Q |
401 |
ctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttatgaagtccttggtgaggtattgaaccaataaggtg |
500 |
Q |
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| T |
36733783 |
ctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttgtgaagtccttggtgaggtattgaaccaataaggtg |
36733684 |
T |
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| Q |
501 |
atgatgtcca |
510 |
Q |
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| T |
36733683 |
aagatgtcca |
36733674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 469
Target Start/End: Complemental strand, 25168224 - 25168110
Alignment:
| Q |
355 |
gtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttg |
454 |
Q |
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|||||||||||||||||||||||||| || |||||| | |||| ||| | |||||| || || ||||||||||| || ||||| |||||||||| |
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| T |
25168224 |
gtttcgtgagttttaagaaactctttggctatttctggatttgaagttactatacaaggtatagagcctaggaaaagttgaattatgggtccatattgaa |
25168125 |
T |
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| Q |
455 |
ttgaaagtttatgaa |
469 |
Q |
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| T |
25168124 |
ttgaaagcttatgaa |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 449
Target Start/End: Complemental strand, 24939620 - 24939511
Alignment:
| Q |
340 |
cggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtatta |
439 |
Q |
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||||||||||| | |||||||||||||||||||||||||| || || ||| | |||| ||| | |||||| | ||| ||||||||||| || |||| |
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| T |
24939620 |
cggttggagaaggaagtttcgtgagttttaagaaactctttggctatttttggacttgaagttactatacaaggaacggagcctaggaaaagttgcatta |
24939521 |
T |
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| Q |
440 |
taggtccata |
449 |
Q |
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| T |
24939520 |
tgggtccata |
24939511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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