View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15831_high_8 (Length: 473)
Name: NF15831_high_8
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 234 - 454
Target Start/End: Complemental strand, 18021466 - 18021246
Alignment:
| Q |
234 |
gttcttaacattaatgtcctcaaaatttccagggagatcaacagtgagtgtaatatttttatgagagtgtaa-agatatgataaatgttttatggagcaa |
332 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
18021466 |
gttcttaacattaatgtcctccaaatttccagggagataaacagtgagtgtaatatttttacgagagtgtaatacatatgataaatgttttatggagcaa |
18021367 |
T |
|
| Q |
333 |
tagcaattttttgatgtaaataaaaaatctttcgtaagccaataaaaaatatggataagta---tatttcgaagaagaaaaagataagtattaataatat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
18021366 |
tagcaattttttgatgtaaataaaaaatctttcgtaagccaatcaaaaatatggataagtatattatttcgaagaagaaaaagataagtattaaaaatac |
18021267 |
T |
|
| Q |
430 |
attttcacataaaggtagctttgat |
454 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
18021266 |
att----cataaaggtagctttgat |
18021246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 18021689 - 18021586
Alignment:
| Q |
18 |
acatttggctagagaggaatgatcggatattcaaaggagtcaataaggaggtgggtgagatttttgacgcaataaagactttatcttggtgttggtgtct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18021689 |
acatttggctagagaggaatgatcggatattcaaaggagtcaataaggaggtgggtgagatttttgacgcgataaagactttatcttggtgttggtgtct |
18021590 |
T |
|
| Q |
118 |
caat |
121 |
Q |
| |
|
|||| |
|
|
| T |
18021589 |
caat |
18021586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 43976303 - 43976207
Alignment:
| Q |
20 |
atttggctagagaggaatgatcggatattcaaaggagtcaataaggaggtgggtgagatttttgacgcaataaagactttatcttggtgttggtgtc |
116 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||| | || ||||| ||||| ||||||||||| || | ||||| ||||||||||||||||||| |
|
|
| T |
43976303 |
atttggcttgagaggaatgataggattttcaaaggggctaaaaaggatgtgggggagatttttgatgcggttaagaccttatcttggtgttggtgtc |
43976207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University