View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_high_9 (Length: 465)
Name: NF15831_high_9
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 26764706 - 26764386
Alignment:
| Q |
20 |
ataaggaaaggtgtgagtttctattatatagaggttgcacttgcggtacgtaaggaattnnnnnnnnnnnnnnngattaagattgaattgagtacgcgct |
119 |
Q |
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| T |
26764706 |
ataaggaaaggtgtgagtttctattatatagaggttgcacttgcggtacgtaaggaattaaaaaaagtaaaaaagattaagattgaattgagtacgcgct |
26764607 |
T |
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| Q |
120 |
atcgattacttaggagagaggtaaggtttggtaacaaatagataaatgacacgtgggttttgttcgttcaaatttgaatgacggttataagaaactgata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764606 |
atcgattacttaggagagaggtaaggtttggtaacaaatagataaatgacacgtgggttttgttcgttcaaatttgaatgacggttataagaaactgata |
26764507 |
T |
|
| Q |
220 |
gttaggattttcctttactgttaggttagaaaattgctttcccaatcaaaattgctcattcccacatataactagcgcaaataacaacaaacgtgctaag |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
26764506 |
gttaggattttcctttactgttaggttagaaaattgctttcccaatcaaaattgctcattctcacatataactagcgaaaataacaacaaacgtgttaag |
26764407 |
T |
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| Q |
320 |
aggtataaattgaggattttg |
340 |
Q |
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| T |
26764406 |
aggtataaattgaggattttg |
26764386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 26764304 - 26764198
Alignment:
| Q |
339 |
tggaccactataaacaacaatcagatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccatctcgcctct |
438 |
Q |
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||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
26764304 |
tggaccactataaacaacaattagattaatcaagttaacatatcctattatacactacatacactagattacccctctatatatttactatctcgtctct |
26764205 |
T |
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| Q |
439 |
tatgtcc |
445 |
Q |
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||||||| |
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| T |
26764204 |
tatgtcc |
26764198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 32138813 - 32138743
Alignment:
| Q |
361 |
agatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccatct |
431 |
Q |
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|||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32138813 |
agattaatcaagttcacatatcctattctacactatatatactagattacccctctatatatttaccatct |
32138743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 48135969 - 48136036
Alignment:
| Q |
361 |
agatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttacca |
428 |
Q |
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|||| |||||||||||||||||||||| |||| |||||| | ||||||| |||||||||||||||||| |
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| T |
48135969 |
agattaatcaagtccacatatcctattctacattacatatattagattatccctctatatatttacca |
48136036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 19763506 - 19763569
Alignment:
| Q |
366 |
aatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccat |
429 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
19763506 |
aatcaagtccacatatcatattctacactacatatactagattatcgctctatatatttaccat |
19763569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 20776081 - 20776126
Alignment:
| Q |
361 |
agatcaatcaagtccacatatcctattatacactacatacactaga |
406 |
Q |
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|||| |||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
20776081 |
agattaatcaagtccacatattctattctacactacatatactaga |
20776126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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