View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_1 (Length: 638)
Name: NF15831_low_1
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 157 - 622
Target Start/End: Complemental strand, 27173780 - 27173313
Alignment:
| Q |
157 |
tcattaaaaataaatcaaagtctatcatgtatgaagagactaaatctacaatctcaataaaaattaaagtgaaaatatttgcaaggcaattctcttttta |
256 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27173780 |
tcattgaaaataaatcaaagtctatcatgtatgaagagactaaatctacaatctcaataaaaattaaagtgaaaatatttgcaaggcaattctcttttta |
27173681 |
T |
|
| Q |
257 |
acacacgtgaatgcagaagcagaaagatcaatcaaaatattaattcaacttgataacctatttaaattaattctcatcaaatattacattgattttcgaa |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |
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| T |
27173680 |
acacacgtgaatgcagaagcagaaagatcaatcaaaatattaattcaacttgataatccatttaaattaattctcatcaaatattacattgattttcaaa |
27173581 |
T |
|
| Q |
357 |
aaattgatcatactagaatgatta------aacgaagacaaaagtcttggatcaaattaccaattttaatttcaaaacttacttgatccatcgaaaattt |
450 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27173580 |
aaattgatcatactagaatgattagtgacaaacgaagacaaaagtcttggatcaacttaccaattttaatttcaaaacttactggatccatcgaaaattt |
27173481 |
T |
|
| Q |
451 |
attcaatcatatgattatcacttatgcattaacaaagtttgcaaatcaaataggtttcgaataaaattggaaaagaaccctaaaattcattcaaaacaca |
550 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27173480 |
attcaatcatatgattatcacttatgcattaacaaagtttgcaaatcaaataggtttcgaataaaattggaaaagaa-cctaaaattcattcaaaacaca |
27173382 |
T |
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| Q |
551 |
ctacaaaagccataatcatccaagagtaatgatgtatgattctatatcttggagtcacgagaaattgagaac |
622 |
Q |
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| T |
27173381 |
ctacaaaagccata---atccaagagtaatgatgtatgattctatatcttggagtcacgtgaaattgagaac |
27173313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 27173975 - 27173841
Alignment:
| Q |
12 |
catcaaagtatttacaaaaccatttttgaatacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaaccccaatt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
27173975 |
catcaaagtatttacaaaaccatttttgaatacaacaccatcaaaatatgttaaatcacatcgataaatagactcgaccagaaatgcatgaatcccaatt |
27173876 |
T |
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| Q |
112 |
atcgactcaacaatgcacagtgtctaatgactcaa |
146 |
Q |
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| T |
27173875 |
atcgactcaacaatgcacatcgtctaatgactcaa |
27173841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 18694687 - 18694619
Alignment:
| Q |
36 |
tttgaatacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaac |
104 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
18694687 |
tttgaatacaacaccatcaaagtatgttaaatcacatcgttaaatagactcgaccatgaatgcatgaac |
18694619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 18710206 - 18710138
Alignment:
| Q |
36 |
tttgaatacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaac |
104 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
18710206 |
tttgaatacaacaccatcaaagtatgttaaatcacatcgttaaatagactcgaccatgaatgcatgaac |
18710138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 3289731 - 3289805
Alignment:
| Q |
30 |
accatttttgaatacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaac |
104 |
Q |
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| T |
3289731 |
accatctttcaatacaacaccatcaaagtatgttaaatcacatcgttaaatagactcgaccatgaatgcatgaac |
3289805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 90099 - 90161
Alignment:
| Q |
42 |
tacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaac |
104 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
90099 |
tacaacaccatcaaagtatgttaaatcacatcgttaaatagactcgaccatgaatgcatgaac |
90161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 18514839 - 18514746
Alignment:
| Q |
36 |
tttgaatacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaaccccaattatcgactcaacaatgcaca |
130 |
Q |
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| T |
18514839 |
tttgaatacaacaccatcaaactatgttaaatcacatcgttaaatagactcgactatgaatgcatgaacacaaagtat-gactcgacaatgcaca |
18514746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 38149653 - 38149718
Alignment:
| Q |
408 |
taccaattttaatttcaaaacttacttgatccatcgaaaatttattcaatcatatgattatcactta |
474 |
Q |
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||||||| |||||| |||||| |||||||||| ||||| | |||||| |||||||||||||||||| |
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| T |
38149653 |
taccaatattaattgcaaaaca-acttgatccaccgaaactctattcagtcatatgattatcactta |
38149718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 24288611 - 24288545
Alignment:
| Q |
407 |
ttaccaattttaatttcaaaacttacttgatccatcgaaaatttattcaatcatatgattatcactta |
474 |
Q |
| |
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||||||||||||||| |||||| |||||||||| ||||| |||||||| ||||||||||||||||| |
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| T |
24288611 |
ttaccaattttaattgcaaaaca-acttgatccaccgaaactttattcagccatatgattatcactta |
24288545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 32625382 - 32625315
Alignment:
| Q |
36 |
tttgaatacaacaacatcaaagtatgttaaatcacatcgataaatagactcgaccgtaaatgcatgaa |
103 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| | ||||||||||| ||| | |||||||||| |
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|
| T |
32625382 |
tttggatacaacactatcaaagtatgttaaatcacattgttaaatagactcaaccatgaatgcatgaa |
32625315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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