View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_11 (Length: 462)
Name: NF15831_low_11
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 30793403 - 30792956
Alignment:
| Q |
1 |
cgcgtcatcgaatagatggctgcctccgatcataaaataacgcaattcaacatattcgatttagttggtaatctatcaagaagtagtctccaagctagaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30793403 |
cgcgtcatcgaatagatgactgcctccgatcataaaataccgcaattcaacagattcggtttagttggtaatctgtcaagaagtagtctccaagctagaa |
30793304 |
T |
|
| Q |
101 |
tagagacctttaatggaat--gcttatgccaaacaaggacatctgaagtacccacaatcggtaaatcttgtgaagtgagaaggtgataacctgtacgcac |
198 |
Q |
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|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30793303 |
tagagaccttcaatggaatctgcttatgtcaaacaaggacatctgaagtacccacaattggtaaatcttgtgaagtgagaaggtgataacctgtacgcac |
30793204 |
T |
|
| Q |
199 |
tgtgtaacccctcataatgttaggggaccaatgccactgatctggagcattatgctgcaaaacaacagtgtgaagtaaagccctacactccgctactaaa |
298 |
Q |
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|
||||||||||| |||||||| |||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30793203 |
tgtgtaaccccccataatgtcagggtaccaatgctactcatctggagcattatgatgcaaaacaacagtgtgaagtaaagccctacactccgctactaaa |
30793104 |
T |
|
| Q |
299 |
tcctcctcccagcccacagtctcctactccacctccatgcttcaccccctcctcccaaccaagatgaaacatagtggcgaccgagcatgacttatttaaa |
398 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30793103 |
tcctcctcccagcccatagtctccttctccacctccatgcttcaccccctcctcccaaccaagatgaaacatagtggcgaccgagcatgacttatttaaa |
30793004 |
T |
|
| Q |
399 |
gataaatcaaataagcgcctaaactgcacactaaaaggagtctcacct |
446 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
30793003 |
gataaatcaaataagtgcctaaaccgcacactaaaaggagtctcacct |
30792956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 213 - 446
Target Start/End: Complemental strand, 30803045 - 30802812
Alignment:
| Q |
213 |
taatgttaggggaccaatgccactgatctggagcattatgctgcaaaacaacagtgtgaagtaaagccctacactccgctactaaatcctcctcccagcc |
312 |
Q |
| |
|
|||||| |||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
30803045 |
taatgtcagggtaccaatgcttctcatctggagcattatgatgcaaaacaacagtgtgaagtaaagccctacactccgctactaaatcctccttcctgcc |
30802946 |
T |
|
| Q |
313 |
cacagtctcctactccacctccatgcttcaccccctcctcccaaccaagatgaaacatagtggcgaccgagcatgacttatttaaagataaatcaaataa |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30802945 |
cacagtctccttctccacctccatgcttcaccccctcctcccaaccaagatgaaacatagtggcgaccgagcatgacttatttaaagataaatcaaataa |
30802846 |
T |
|
| Q |
413 |
gcgcctaaactgcacactaaaaggagtctcacct |
446 |
Q |
| |
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| |||||||| ||||||||||||||||||||||| |
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| T |
30802845 |
gtgcctaaaccgcacactaaaaggagtctcacct |
30802812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 414
Target Start/End: Complemental strand, 17271629 - 17271443
Alignment:
| Q |
230 |
tgccactgatctggagcattatgctgcaaaacaacagtgtgaagtaaagccctacactccgctactaaatcctcctccca-gcccacagtctcctactcc |
328 |
Q |
| |
|
||||||||||||| | | || ||||||||| |||| ||||||||||| |||||||| ||| |||||||||||||| | ||||| ||||| |||| |
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|
| T |
17271629 |
tgccactgatctgaaatagtaggctgcaaaaaaacattgtgaagtaaaatcctacactatactaacaaatcctcctcccacgtccacaacctcctcctcc |
17271530 |
T |
|
| Q |
329 |
acctccatgcttcaccccct-cctcccaaccaagatgaaacatagtggcgaccgagcatgacttatttaaagataaatcaaataagc |
414 |
Q |
| |
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||||||| || || || || |||||||||| | ||| ||||||||||||| |||||||||| |||||| ||||| |||||||||| |
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| T |
17271529 |
acctccaagcatctccaccagcctcccaacccaagtgagacatagtggcgactgagcatgactcatttaaggataactcaaataagc |
17271443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 309
Target Start/End: Complemental strand, 4324389 - 4324201
Alignment:
| Q |
121 |
cttatgccaaacaaggacatctgaagtacccacaatcggtaaatcttgtgaagtgagaaggtgataacctgtacgcactgtgtaacccctcataatgtta |
220 |
Q |
| |
|
||||||||||| || ||||||| |||||||| ||||||||| | ||||| ||||| |||||||||||||||| |||||||| | ||||| |
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|
| T |
4324389 |
cttatgccaaatgagagcatctgaggtacccacttccggtaaatcctaagaagtaagaagagcataacctgtacgcactatgtaaccctaaaaaatgtcg |
4324290 |
T |
|
| Q |
221 |
ggggaccaatgccactgatctggagcattatgctgcaaaacaacagtgtgaagtaaagccctacactccgctactaaatcctcctccca |
309 |
Q |
| |
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|| ||||||||||||||||| || ||||| |||||||||||||| | | |||||||| ||||||||||||||||| |||||||||||| |
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| T |
4324289 |
ggagaccaatgccactgatcacgaacattaggctgcaaaacaacaatattaagtaaagtcctacactccgctactagatcctcctccca |
4324201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 446
Target Start/End: Complemental strand, 4324188 - 4324087
Alignment:
| Q |
345 |
ccctcctcccaaccaagatgaaacatagtggcgaccgagcatgacttatttaaagataaatcaaataagcgcctaaactgcacactaaaaggagtctcac |
444 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||| ||||||| | ||| | ||||||| ||| |||| ||||||| ||||||||||||| |
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|
| T |
4324188 |
ccctcctcccaaccaagacgaaacatagtggcgaccgaacacgacctatttaaggttaacttaaataagtgccgaaaccgcacactgaaaggagtctcac |
4324089 |
T |
|
| Q |
445 |
ct |
446 |
Q |
| |
|
|| |
|
|
| T |
4324088 |
ct |
4324087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 360
Target Start/End: Complemental strand, 30739891 - 30739760
Alignment:
| Q |
230 |
tgccactgatctggagcattatgctgcaaaacaacagtgtgaagtaaagccctacactccgctactaaatcctcctccca-gcccacagtctcctactcc |
328 |
Q |
| |
|
||||||||||||| | ||||| ||||||| |||| |||||||||||| | |||||| ||||| || || | || ||| |||||||| ||||| |||| |
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| T |
30739891 |
tgccactgatctgaaacattagactgcaaagtaacattgtgaagtaaagtcacacactctgctaccaactctttcttccatgcccacagcctcctcctcc |
30739792 |
T |
|
| Q |
329 |
acctccatgcttcaccccctcctcccaaccaa |
360 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
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|
| T |
30739791 |
acctccacgcttcaccccctcctcccaaccaa |
30739760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 28173873 - 28173794
Alignment:
| Q |
280 |
cctacactccgctactaaatcctcctccca-gcccacagtctcctactccacctccatgcttcaccccctcctcccaacc |
358 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||| |||||| |||||| |||| || ||||||||||||||||||| |
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|
| T |
28173873 |
cctacactccgctaccaactcctcctcccacgcccacaatctcctcctccacttccacgcctcaccccctcctcccaacc |
28173794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 48497856 - 48497781
Alignment:
| Q |
371 |
agtggcgaccgagcatgacttatttaaagataaatcaaataagcgcctaaactgcacactaaaaggagtctcacct |
446 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
48497856 |
agtggcgaccgagcacgacttatttaagaataattcaaataagcggctaaaccgcacacataaaggagtctcacct |
48497781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 26805204 - 26805296
Alignment:
| Q |
280 |
cctacactccgctactaaatcctcctccca-gcccacagtctcctactccacctccatgcttcaccccct-cctcccaaccaagatgaaacat |
370 |
Q |
| |
|
|||||||||| |||| | ||||||||||| ||||||| |||||| ||||||||||| || ||||| ||| ||||||||||||| | |||||| |
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|
| T |
26805204 |
cctacactcctctaccatgtcctcctcccacgcccacaatctcctcctccacctccacgcctcaccacctacctcccaaccaaggttaaacat |
26805296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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