View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_12 (Length: 452)
Name: NF15831_low_12
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 54881231 - 54880801
Alignment:
| Q |
1 |
gttatgtttctgtgtatgttcatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctc |
100 |
Q |
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| T |
54881231 |
gttatgtttctgtgtatgttgatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctc |
54881132 |
T |
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| Q |
101 |
tcctgcaacnnnnnnncgcacgatattatttattattaattaattaaagaccattttaaaacgtggttagagttgtggttgcattagtgacatctgactc |
200 |
Q |
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| T |
54881131 |
tcctgcaacaaaaaa-cgcaagatattatt--------attaattaaagaccattttaaaacgtggttagagttgtggttgaattagtcacatctgactc |
54881041 |
T |
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| Q |
201 |
atgagattctttaaaatattaaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttggagttgaggtgaacaaga |
300 |
Q |
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| T |
54881040 |
atgagattctttaaaatattaaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttggagttgaggtgaacaaga |
54880941 |
T |
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| Q |
301 |
gaaaaacgagtgtgtttggttgcgagcttgttggcacggtggatggtatgatcacatccatggcaaagagcagcttcatctgaaggacagaacatagtag |
400 |
Q |
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| T |
54880940 |
gaaaaacgagtgtgtttggttgcgagcttgttggcacggtggatggtatgatcacatccatggcaaagagcagcttcatctgaaggacagaacatagtag |
54880841 |
T |
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| Q |
401 |
cctcagctttctcacacacatcacattggatcttcatctc |
440 |
Q |
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| T |
54880840 |
cctcagctttctcacacacatcacattggatcttcatctc |
54880801 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 26846622 - 26846544
Alignment:
| Q |
30 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaa |
108 |
Q |
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||||||| |||| ||||||||| ||||| || || ||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
26846622 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaa |
26846544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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