View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_14 (Length: 414)
Name: NF15831_low_14
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_14 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 38998579 - 38998178
Alignment:
| Q |
13 |
tgttgttggttagttacagagtttgttaccttacgttactcttgcagccgctgatatagcttatactatgttgttcatcacagtgagtaaccaatcaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998579 |
tgttgttggttagttacagagtttgttaccttacgttactcttgcagccgctgatatagcttatactatgttgttcatcacagtgagtaaccaatcaaag |
38998480 |
T |
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| Q |
113 |
acaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccac |
212 |
Q |
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| T |
38998479 |
acaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccac |
38998380 |
T |
|
| Q |
213 |
tttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38998379 |
tttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaact |
38998280 |
T |
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| Q |
313 |
tccgcaaaagtaacaagatactacaagttcgaaacaatgcttattgttgtgccgttggagtatttacttcccatcttatgtgatgttgcaacgctgacag |
412 |
Q |
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| T |
38998279 |
tccgcaaaagtaacaagatactacaagttcgaaacaatgcttattgttgtgccgttggagtatttacttcccatcttatgtgatgttgcaacgctgacag |
38998180 |
T |
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| Q |
413 |
at |
414 |
Q |
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|| |
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| T |
38998179 |
at |
38998178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 100 - 402
Target Start/End: Original strand, 41048929 - 41049228
Alignment:
| Q |
100 |
taaccaatcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattccccc |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| | | ||||||||||||| |
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| T |
41048929 |
taaccaatcaaggacaccaaatgacgatgacggaactgagacaacatttcaatttcagttctaaattcagcaatcccttgctgggaccgcggattccccc |
41049028 |
T |
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| Q |
200 |
ttttcactgccactttcctgccatcccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgt |
299 |
Q |
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| T |
41049029 |
tcttcactgccacttttctaccatcccttaactctcccttgtatactttcccaaaaccaccaacccca---ataacccaactctcatcaaaattatttgt |
41049125 |
T |
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| Q |
300 |
accttcttgaacttccgcaaaagtaacaagatactacaagttcgaaacaatgcttattgttgtgccgttggagtatttacttcccatcttatgtgatgtt |
399 |
Q |
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| T |
41049126 |
accctcctgaacttccgcaaaagggacacggtactcgaagttcgaagcagcgcttattgtcgtgccattggaatatttacttcccattgtatgggatgtt |
41049225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 397
Target Start/End: Original strand, 41041604 - 41041718
Alignment:
| Q |
283 |
tcatcaaaattgtttgtaccttcttgaacttccgcaaaagtaacaagatactacaagttcgaaacaatgcttattgttgtgccgttggagtatttacttc |
382 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||| |||| |||||| ||||||| || ||| ||||||||||||||||||||||||||||||| |
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| T |
41041604 |
tcatcaaaattgttagtactctcttgaacttctgcaaaaggaacacgatactgcaagttcaaatcaacacttattgttgtgccgttggagtatttacttc |
41041703 |
T |
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| Q |
383 |
ccatcttatgtgatg |
397 |
Q |
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| T |
41041704 |
ccatcgtatgtgatg |
41041718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 41041463 - 41041537
Alignment:
| Q |
107 |
tcaaagacaccaaatgacgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgca |
181 |
Q |
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||||||||||| ||| ||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
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| T |
41041463 |
tcaaagacacctgatgccgatggtggaactgagacaacatttcaatttcaactcgaaattcagcaatcccctgca |
41041537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 322
Target Start/End: Original strand, 22901739 - 22901934
Alignment:
| Q |
124 |
cgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccactttcctgccat |
223 |
Q |
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| T |
22901739 |
cgatgacggaactgagacaacatttcaatttcagttcggaactctgcaagtccctgatgcgaccgagggttccccctcttacaagcaactttagttccat |
22901838 |
T |
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| Q |
224 |
cccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaag |
322 |
Q |
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| T |
22901839 |
cgcttaattcacctttgtataccttaccaaaaccacctacgccga---taacccaactctcatcaaaattgtttgttgcctcctgaactaccgcaaaag |
22901934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 322
Target Start/End: Original strand, 22953407 - 22953602
Alignment:
| Q |
124 |
cgatgacggaactgagacaacatttcaatttcagctctaaattccgcaatcccctgcagcaatcgcggattcccccttttcactgccactttcctgccat |
223 |
Q |
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|||||||||||||||||||||||||||||||||| || || || |||| ||||| || | || || |||||||| || || ||||| | |||| |
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| T |
22953407 |
cgatgacggaactgagacaacatttcaatttcagttcggaactctgcaagtccctgatgcgaccgagggttccccctcttacaagcaactttagttccat |
22953506 |
T |
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| Q |
224 |
cccttaagtctcgcttgtatactttcccaaaaccacctaccccaactataacccaactctcatcaaaattgtttgtaccttcttgaacttccgcaaaag |
322 |
Q |
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| T |
22953507 |
cgcttaattcacctttgtataccttaccaaaaccacctacgccga---taacccaactctcatcaaaattgtttgttgcctcctgaactaccgcaaaag |
22953602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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