View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_15 (Length: 410)
Name: NF15831_low_15
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 7368451 - 7368077
Alignment:
| Q |
19 |
tctctagatgataagactaccaagtctattgtgccaattttgaattggtaaaagaaggaacacagcnnnnnnnnnnnnnnnnntttactaatggaagtaa |
118 |
Q |
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| T |
7368451 |
tctctagatgataagactaccaagtctattgtgccaattttgaattggtaaaagaaggaacacag-aaaaaataaacaaaaaatttactaatggaagtaa |
7368353 |
T |
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| Q |
119 |
cctggaataagagaaacgaaatgtacattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaat |
218 |
Q |
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| T |
7368352 |
cctggaataagagaaacgaaatgtgcattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaat |
7368253 |
T |
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| Q |
219 |
gagatatcgaacttatatgataaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgaacagccta |
318 |
Q |
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| T |
7368252 |
gagatatcgaacttatatgacaaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgagcaaccta |
7368153 |
T |
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| Q |
319 |
taactaacttattgagagtgattatatactctaatacattagaaacaaagaaaataggaagaaacttctacgtgtg |
394 |
Q |
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| T |
7368152 |
taactaacttattgagagtgattatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
7368077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 7377196 - 7377088
Alignment:
| Q |
274 |
aaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtgattatatactctaatacattagaaacaaagaaaat |
373 |
Q |
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| T |
7377196 |
aaaattgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata-attaaaaacagagaaaat |
7377098 |
T |
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| Q |
374 |
aggaagaaac |
383 |
Q |
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| T |
7377097 |
aggaagaaac |
7377088 |
T |
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