View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15831_low_16 (Length: 410)
Name: NF15831_low_16
Description: NF15831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15831_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 1994468 - 1994852
Alignment:
| Q |
17 |
agttgtatcaagcaaaacttcatagaaaccactcaaacatgaatttatagttggcacctccttgctaccattgaacaaaaagaaagtttataaaactaat |
116 |
Q |
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| T |
1994468 |
agttgtatcaagcaaaacttcatagaaaccactcaaacatgaatttatagttggcacctccttgctaccattgaacaaaaagaaagtttataaaactaat |
1994567 |
T |
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| Q |
117 |
tgaaaggaagaaaatattagtaaaatatattgaaataacttcaaaagttatataagaaataaattattgaacacttgtaacttgattatgatgaatcttt |
216 |
Q |
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| T |
1994568 |
tgaaaggaagaaaatattactaaaatatattgaaataacttcaaaagttttataagaaataaattattgaacacttgtgacttgattatgatgaatcttt |
1994667 |
T |
|
| Q |
217 |
gatttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaact |
316 |
Q |
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| T |
1994668 |
gatttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaact |
1994767 |
T |
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| Q |
317 |
tgtctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaattgcctttg |
401 |
Q |
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| T |
1994768 |
tgtctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaattgtctttg |
1994852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 219 - 394
Target Start/End: Original strand, 1987708 - 1987878
Alignment:
| Q |
219 |
tttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttg |
318 |
Q |
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| T |
1987708 |
tttatcaatgatattgtgggttt-gtataaga----aactgaccttcttcaatccaggtatagtggcagacagtgctatgaacctttcagtaagaacttg |
1987802 |
T |
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| Q |
319 |
tctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaatt |
394 |
Q |
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| T |
1987803 |
tctcctttttctctcagccataatgtgatcttgcatctcacaagagcttctaagattcttagttcttttcttaatt |
1987878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 45130793 - 45130763
Alignment:
| Q |
318 |
gtctcctttttctctcagccataatgtgatc |
348 |
Q |
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| T |
45130793 |
gtctcctttttctctcagccataatgtgatc |
45130763 |
T |
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